Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62260 437 / 5e-153 Protein phosphatase 2C family protein (.1.2) AT3G17250 360 / 4e-122 Protein phosphatase 2C family protein (.1) AT1G48040 358 / 7e-122 Protein phosphatase 2C family protein (.1) AT2G33700 300 / 4e-99 Protein phosphatase 2C family protein (.1) AT3G51470 285 / 8e-94 Protein phosphatase 2C family protein (.1) AT2G25620 278 / 2e-90 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT4G31750 155 / 6e-44 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 150 / 6e-42 Protein phosphatase 2C family protein (.1) AT5G24940 150 / 4e-41 Protein phosphatase 2C family protein (.1) AT1G07160 135 / 6e-36 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115500 [exp] 622 / 0 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.010G151500 [exp] 388 / 6e-134 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1) Potri.008G100700 [exp] 380 / 9e-131 AT1G48040 376 / 5e-129 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 300 / 2e-99 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.005G253700 [exp] 299 / 1e-98 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 297 / 4e-98 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 295 / 2e-97 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 279 / 4e-91 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 278 / 5e-91 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009993 [exp] 446 / 1e-156 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10038058 [exp] 446 / 2e-156 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10037832 [exp] 371 / 3e-127 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10017106 [exp] 366 / 4e-125 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 313 / 3e-104 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 313 / 5e-104 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 303 / 2e-100 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 304 / 4e-100 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 281 / 4e-92 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 276 / 4e-90 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.002G190400.1 pacid=42779006 polypeptide=Potri.002G190400.1.p locus=Potri.002G190400 ID=Potri.002G190400.1.v4.1 annot-version=v4.1 ATGATAGTTGAATCAGAGGTAGTAAGCGTGCCGGTGTTGGATGTTCAATATTTTGCTGCTGAAGGAAAGAGCCCTGCTCATGAGATTGAAGATGTTGTTA CTGTTTCTTCTTCCCCTAGAAGGTTAAGTCAAGTTCGAGTCTCCGATTTGATCTCCGCCGAGCTATCCGCCTCCCAATTGGATATTACATGTTCAGAAAA AGTTTCAGATGCGGAAACTATTGAGTCCGCCATCCTGGAGTTTGTTCCTAGTATTCGTTCTGGTAGCTTTGCTGACATTGGGAATCGAAGATACATGGAA GATGAGCATATACGCATAGATGATCTATCCGCTGAATTGGGCTCAGCCTTTAAGTTTCCAAAGCCCAGTGCTTTCTATGGGGTTTTCGATGGTCATGAAG GACCGGAAGCAGCAGCTTATATCAGAAGAAATGCAATGAGAATCTTTTTTGAAGATGTAAATTTCCCTCAAACATCTGAAGTTGACAATATATTCTTGAA GGAGGTTGAGAACTCCCTCCGGAAAGCATTTCACCAGGCTGATCTGGCTTTGGAAAATGACTGCAGTGTGAGCACCTTTTCAGGGACAACTGCACTTACT GCTTTCGTATTTGGAAGGCTATTAATGGTTGCTAATGCTGGTGATTGCCGAGCAGTTCTATGTCGTAAAGGAAAGGCAATCGACATGTCCCAAGACCATA GGCCTATTTATCCATCAGAGCGAAGGCGGGTTGAAGAATTGGGTGGGTATGTTGATAATTATGGATTTCTAAATGGTGAACTGTCAGTTTCCCGAGCACT TGGTGACTGGTACAATAAACACTCTTGGGGTTCTCCTTCACCTCTCATTTCTGAGCCAGAATTCCAGCACCTTGTTCTAACAGAGGAAGATGAATTTCTC ATAATTGGTTGTGATGGGATTTGGGAATTCATTTCAAGTCAGCATGCGGTCAGCCTTGTCCGCCGTGGGCTGCGGCAGCATGATGACCCTGAGAAGTGTG CTAAGGACCTTGTCATGGAAGCCTTGGATTGTAAAGCATTGGACAATCTCACTGCACTTATTGTGTGCTTCTCTTCACCACTTGCACCTAAACAGAAACA AGGGTGTAGCCTCTCTGCAGAGGCATTGTGTAGCTTGAGGAACCATTTGGAACGCAGTGCCAACTGCTGA
AA sequence Show only first row Show all	>Potri.002G190400.1 pacid=42779006 polypeptide=Potri.002G190400.1.p locus=Potri.002G190400 ID=Potri.002G190400.1.v4.1 annot-version=v4.1 MIVESEVVSVPVLDVQYFAAEGKSPAHEIEDVVTVSSSPRRLSQVRVSDLISAELSASQLDITCSEKVSDAETIESAILEFVPSIRSGSFADIGNRRYME DEHIRIDDLSAELGSAFKFPKPSAFYGVFDGHEGPEAAAYIRRNAMRIFFEDVNFPQTSEVDNIFLKEVENSLRKAFHQADLALENDCSVSTFSGTTALT AFVFGRLLMVANAGDCRAVLCRKGKAIDMSQDHRPIYPSERRRVEELGGYVDNYGFLNGELSVSRALGDWYNKHSWGSPSPLISEPEFQHLVLTEEDEFL IIGCDGIWEFISSQHAVSLVRRGLRQHDDPEKCAKDLVMEALDCKALDNLTALIVCFSSPLAPKQKQGCSLSAEALCSLRNHLERSANC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62260			Protein phosphatase 2C family ...		Potri.002G190400 [exp]	0	1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.007G126900 [exp]	8.66	0.8923
AT2G46080			unknown protein		Potri.014G088600 [exp]	11.83	0.8587
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035500 [exp]	29.15	0.7927
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Potri.010G090100 [exp]	39.59	0.7761
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036700 [exp]	41.47	0.7798
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	45.28	0.8672
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	46.98	0.8669
					Potri.006G174801 [exp]	59.11	0.8633
AT3G11290			unknown protein		Potri.001G256500 [exp]	60.76	0.8642
					Potri.007G042350 [exp]	62.66	0.7732

Compare expression of checked genes

Potri.002G190400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.