Plant FIBer expression Database

Pt-GLB1.1 (Potri.002G191300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-GLB1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01900 245 / 2e-83 PII, P11, GLB1 GLNB1 homolog (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0089 GlnB-like PF00543 P-II Nitrogen regulatory protein P-II
Representative CDS sequence
>Potri.002G191300.1 pacid=42779760 polypeptide=Potri.002G191300.1.p locus=Potri.002G191300 ID=Potri.002G191300.1.v4.1 annot-version=v4.1
ATGGCCTCGGCAGCAGTGAAACCAGGCTCCCTCACTTCTCTTCAATTTCACTCTTCTCTCAACAAACAACTCCCTCTTTTTGATTCCCTTTTGAAACCTC
TCAAGTTGAAGAATTCTCGATTCTCTCAGTTTAACTTGACCCTAAACACCTCACGAAATGCGTCCATTATTCCTACAATTAGAGCCCAAAGCTCCTCTGT
TCCTGAGTATATTCCAGATGCCAAATTCTACAAGATAGAAGCAATTTTGAGGCCCTGGCGAGTCTCGCAAGTTTCCTCGGCTCTGTTGAAAATTGGTATT
CGTGGTGTTACTGTTTCTGATGTTCGAGGCTTTGGGGCTCAAGGTGGTTCAAAGGAGAGGCATGGTGGCTCAGAGTTTTCCGAAGACAAGTTTGTTGCTA
AAGTTAAGTTGGAGATTGTAGTGAGCAAAGACCAGGTTGAAGCTGTCATAGAAAAGGTCAAAGACGAGGCATGGACTGGAGAGATTGGAGATGGCAAGAT
TTTCTTGGTACCTGTTGCAGATGTAATAAGAATTCGCACTGGTGAACGTGGAGAGAAGGCTGAAAGGATGACAGGAGGGTTGTCCGACATGACATTTTCT
GCATGA
AA sequence
>Potri.002G191300.1 pacid=42779760 polypeptide=Potri.002G191300.1.p locus=Potri.002G191300 ID=Potri.002G191300.1.v4.1 annot-version=v4.1
MASAAVKPGSLTSLQFHSSLNKQLPLFDSLLKPLKLKNSRFSQFNLTLNTSRNASIIPTIRAQSSSVPEYIPDAKFYKIEAILRPWRVSQVSSALLKIGI
RGVTVSDVRGFGAQGGSKERHGGSEFSEDKFVAKVKLEIVVSKDQVEAVIEKVKDEAWTGEIGDGKIFLVPVADVIRIRTGERGEKAERMTGGLSDMTFS
A

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01900 PII, P11, GLB1 GLNB1 homolog (.1) Potri.002G191300
[exp]
0 1 Pt-GLB1.1
AT1G64350 SEH1H Transducin/WD40 repeat-like su... Potri.003G138300
[exp]
2.44 0.7904 SEH1.1
AT5G04190 PKS4 phytochrome kinase substrate 4... Potri.005G090000
[exp]
14.00 0.7378
AT1G67325 Ran BP2/NZF zinc finger-like s... Potri.003G172500
[exp]
16.61 0.7780
AT2G41530 ATSFGH ARABIDOPSIS THALIANA S-FORMYLG... Potri.006G047000
[exp]
16.70 0.7921
AT5G51880 2-oxoglutarate (2OG) and Fe(II... Potri.015G135300
[exp]
27.20 0.7717
AT1G80670 RAE1 RNA export factor 1, Transduci... Potri.001G048100
[exp]
32.03 0.7438
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.005G215900
[exp]
35.91 0.7570
AT4G33670 NAD(P)-linked oxidoreductase s... Potri.001G287100
[exp]
36.41 0.6714
AT2G41600 Mitochondrial glycoprotein fam... Potri.006G046350
[exp]
54.22 0.6890
AT1G14620 XTR2, EXGT-A2, ... decoy (.1.2) Potri.002G164800
[exp]
56.32 0.7401

Potri.002G191300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.