Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 395 / 4e-138 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 328 / 3e-112 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G30040 310 / 1e-104 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 293 / 7e-98 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 270 / 4e-89 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT5G07200 152 / 7e-43 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT3G19000 145 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 143 / 1e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G51810 142 / 4e-39 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G15550 137 / 2e-37 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117300 [exp] 583 / 0 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 437 / 9e-155 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 427 / 1e-150 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G378400 [exp] 341 / 5e-117 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 340 / 5e-116 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 327 / 1e-111 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.015G002800 [exp] 158 / 2e-45 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 149 / 3e-42 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G164200 [exp] 149 / 7e-42 AT4G10500 305 / 4e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025016 [exp] 459 / 2e-163 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 456 / 5e-162 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 428 / 4e-151 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 347 / 2e-119 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 327 / 4e-112 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 280 / 4e-93 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 187 / 1e-58 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10011476 [exp] 152 / 7e-43 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10027399 [exp] 151 / 1e-42 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 152 / 2e-42 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G191900.1 pacid=42779024 polypeptide=Potri.002G191900.1.p locus=Potri.002G191900 ID=Potri.002G191900.1.v4.1 annot-version=v4.1 ATGGTAGTTCCTTCTCCAACTCCAGCACGAACCAGAAAAACGAAGGCCTTTGGAATTCCTACTGTTGATCTCTCTCTTGATAGGTCAAACGTATCGAAAC TGATCGTAAGGGCATGTGAAGAATATGGATTCTTCAAAGTGACGAATCATGGGGTCAGTAAGGAGGTCGTAACCAGAATGGAGGAGGAAGCTGCTCATTT TTTCTCAAAACCAGCCACGGAAAAGCACCGAGCTGGACCTGCTAGTCCTTTTGGCTATGGTTGCAAAAATATTGGCTGCAATGGTGACATGGGCGAGCTT GAATATCTTCTCCTCCACGCCAATCCTCTCTCCGTCTTTGAAAGATCCAAAACCATCTCAAATGACCCTTCAGAATTCAGCTGCGTGGTGAATGATTACA TACAAGCGGTTAAGCAACTGGCGTGTGAGATTCTTGATCTAACGGCTGAGGGCTTGTGGGTCCCGGATAAACGTGCATTCAGCAGGTTCATCAGAGATGT CCACAGCGATTCTGTTCTTAGACTTAATCACTACCCTGCATTCGAAGAGATCATGGACTGGGACCCATCACCTAAAACAATTGGTTTTGGCGAGCACTCC GACCCTCAAATCTTGACCATCTTGCGATCCAACGACGTTGGGGGCCTCCAAATTTATTTGCGTGATGGCTTGTGGGTCCCTGTTCCTCCTGACCCCACCG GATTCTATGTGATCGTGGGGGATGCCTTCCAGGTTTTAACGAATGGGAGGTTTGAAAGCGTTAGACACAGAGTGTTGGCGAGCTCGGGGAAGCCAAGAAT GTCAATGATGTACTTTGGGGCGCCACCGCTTAACGCATGGATCTCTCCGCCTCCACAGCTGGTCTTGCCACAAAATCCAAGCCTCTACAAACCCTTCACT TGGAGTGAATTCAAGAAAGCTGCCTATTCTCTGCGATTGAGAGATACGCGTCTTGACCTCTTCAAGATTCATGCCACAGAAAAATTTGCTTCTTGA
AA sequence Show only first row Show all	>Potri.002G191900.1 pacid=42779024 polypeptide=Potri.002G191900.1.p locus=Potri.002G191900 ID=Potri.002G191900.1.v4.1 annot-version=v4.1 MVVPSPTPARTRKTKAFGIPTVDLSLDRSNVSKLIVRACEEYGFFKVTNHGVSKEVVTRMEEEAAHFFSKPATEKHRAGPASPFGYGCKNIGCNGDMGEL EYLLLHANPLSVFERSKTISNDPSEFSCVVNDYIQAVKQLACEILDLTAEGLWVPDKRAFSRFIRDVHSDSVLRLNHYPAFEEIMDWDPSPKTIGFGEHS DPQILTILRSNDVGGLQIYLRDGLWVPVPPDPTGFYVIVGDAFQVLTNGRFESVRHRVLASSGKPRMSMMYFGAPPLNAWISPPPQLVLPQNPSLYKPFT WSEFKKAAYSLRLRDTRLDLFKIHATEKFAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Potri.002G191900 [exp]	0	1	GA2.6
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.006G202600 [exp]	3.74	0.9335
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088600 [exp]	6.48	0.9113
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088700 [exp]	8.24	0.9151
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.011G130951 [exp]	10.58	0.8875
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	11.35	0.9142
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.001G298300 [exp]	11.83	0.9123	3
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	12.40	0.9092
AT2G28890		PLL4	poltergeist like 4 (.1)		Potri.001G239300 [exp]	14.24	0.8872
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	16.30	0.8904
AT2G44260			Plant protein of unknown funct...		Potri.018G087400 [exp]	24.00	0.8998

Compare expression of checked genes

Potri.002G191900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.