Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) AT1G11420 186 / 1e-49 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT2G47230 183 / 3e-48 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT3G62300 177 / 4e-46 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G03300 170 / 6e-44 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT1G09320 145 / 2e-36 agenet domain-containing protein (.1) AT2G47220 139 / 7e-35 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT5G23770 136 / 4e-34 ATDUF8 DOMAIN OF UNKNOWN FUNCTION 724 8 (.1.2) AT5G23800 126 / 4e-30 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT5G23780 110 / 1e-25 ATDUF9 DOMAIN OF UNKNOWN FUNCTION 724 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117800 [exp] 1393 / 0 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.005G011100 [exp] 154 / 4e-41 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 145 / 7e-38 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G151200 [exp] 74 / 2e-15 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.009G155250 [exp] 54 / 8e-09 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.010G149301 [exp] 51 / 1e-07 AT3G06520 71 / 1e-15 agenet domain-containing protein (.1) Potri.001G365800 [exp] 56 / 2e-07 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.009G072600 [exp] 47 / 6e-05 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.006G017400 [exp] 47 / 8e-05 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010060 [exp] 446 / 4e-142 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10004508 [exp] 441 / 5e-140 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10002437 [exp] 257 / 7e-74 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10017088 [exp] 141 / 2e-35 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10000615 [exp] 139 / 3e-34 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 139 / 1e-33 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037805 [exp] 133 / 1e-32 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10000430 [exp] 118 / 3e-28 AT3G62300 84 / 3e-17 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10027325 [exp] 81 / 2e-17 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10009266 [exp] 73 / 2e-14 AT1G06340 86 / 2e-21 Plant Tudor-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.002G192300.6 pacid=42776865 polypeptide=Potri.002G192300.6.p locus=Potri.002G192300 ID=Potri.002G192300.6.v4.1 annot-version=v4.1 ATGGTGGTTTTAGACTCTAACCCCGAACCCCAACCCCAACCCCAACAAAACCCTCGACAGCAAGACCAGACTATCCTCTTCAACAAGGGTGAGGAAGTTG AAGTAAGCAGTGACGAGGAAGGTTTCAGGGGTGCTTGGTATTTAGCTACCATTTTAGAATTCCCGAAACCACAATCACAAGCAGCAGTGAAATCAGCTTC GAAGAAGAAAAGGAAAGCGATTGTTCAGTACAAGACTCTGGTTACTGAAGATGGGTCTGCTCCTCTGGTAGAACAAGTCGATCCTCATCTCATTAGGCCT TTGCCCCCGCAATATTTACTGAAAAATGGCGGGCTTTTTCAAGAAAACGAAGCCATTGATGCAAGCCTTAGAGATGGCTGGTGGTCTGGTGTTGTAAAGA AGGTTCTTGATGGGGGGTCAAGATACATGGTTTATTTTGATAACCCTCCTGATGTTGTTGAATTTGAGGCCAAAGATTTAAGGCTTCATTTGGATTGGGT TGATGGCAACTGGGTCCAACCCCAAATGCAGCGGCAAGCAACAGGATCGGTTTTTAGCTCAGGGACAGAAGTAGAAGTGAACCTTGAAAAAGATAATGTA CGTGATATTTGGTTGCCTGCAGTTGTCATCAAAGAAAACGAGGATAAAACTTTCTTGGTAAAGTGTCTAAGCGCGCGGAATAGTGATGAGGCTGGACCGA TGAAAACAATTGTGGATTTTCTTCACATTCGACCCACTCCTCCTCTTTATGCAGACAGAAATTACGAGTTGCTGGAAAGGGTAGATACACGCTATGGCTT TGGTTGGAGATCTGGAGTAATTACAAAACTTCTTGCTGGGAGGAGATACAATGTCTTTTTTAAGCACGGAAATGAGGACAAGGAGCTTAGTCACTCAAAG ATAAGGCCTCATCTGGAATGGGTAGATGGAAAATGGATTAGTAAATCAAAGGAAGTTAGAATTGTTTCTGATAGTCAAGGACAGTTTGTTGGCACCGACA GTAGTGACAACCCTGATGTGGCGGTAAAACTCAAAAGCTCAAGTGCAGCTGAGGATAAGACCAAAGAGAAAACAGTTTCCACAAACATAAGGGATCCCAC AGAGCAGTCAATGCATTCGGGTGAAAAATCAGTGAAGAAGCTAAAGCTGACACTTTATAATGGTGGCGGCTCATGTTCAAGCGCCTCCAGTATGCTAACT GATGTAGATACTACTGAAGCTCCATTATCAGTTACAGTTCTGCAGTCTAGGAAGATACCAATTGAAATGTCAAGCAACGAAAAACTTTGTGGTTTTACCA CTTCAAAAACAGGAGGTAAAAGAGCAAGATGCATAGAAAAACATATGGTTGATGCTCAGCCTTCTAACAAAACTGAGAACTTTTCTGCAGGAAAGACAAC TAAGACTAAGCTACATAAAGTGCTCGAATTGGACTGCCCGAAAGTGGACATTGTAACTAGGAAAGGGAGAGCCACCAAATCACCTTTTAGAAGTCCAAAC TCTTCAGCAGCAGTGAAGGACGGTGATGCAGTGGAAGTTACTGTTCAAGGCATCAGTGAGAGTGATGTTAAAACAAAAGAAATTGAAGTCCCTCTCATCA TAGGGTTAAAAGCTATAGAGGGCATTTATCAGGATGACAAGGAAATGCTGAAGCTTATGAGGGATCAGAAGAAGGGTTTGAATGATTCAGCCAAAGACAA GAACATGGAATATGTGGGAAGCAGTCAAAGAAGAAAGAGGGGAAGACCACGCAAATTAATCATAAACTCAAAAGCTCTGGTGGCTAGTAAGGACTTTGGC TCTGTGGACCTTGCTGATGAAGTTGTACAAGTGGTTATTAAAGATCTTACAACTAATGAAGTTGAGTGGCCTACACAGGCAAGGGCGGAGCCTAAAGTTT CACAAAATTCTTCAAGAGAGAAAAGCAGTGAAATTTCCAAGACAGATTTCATGTCAAGGGAAGCTGATGCTGATGCTGCTGCATCGAAGAATGTTGCTGA TGATGATCAACCTCTATCAACCTGGTTTGGGAATATGCACGGTTCAGCAGGTCTTGAAGAATTAAGATTATCGACTGGTCGGATTGCTAGTGGAGTGAGT GAGGCTAGAGAAAAAAAAGTTGTAGCAGTGCAATCGTGTACGGTTGATCCAAAAAGCAATGACACTATGGTGGAAAATCAGTTGGTGCCTTTTGTAAAGA AGTCTCCGGTTTGGAACACAATTGAATCTATGGAAGTATTCCAAATCATTCCGCAAAAACCACACTTCCATCCTTTGACTGAATGTAAAGAAGAGTATCG TGAAGGATCAGCCATTGGCATTATGGTAACATTCGCCAGTTTGTTTGAGAAGATATCCTCCCTTCAATTTGATGATTGTAGAAGCATATTAGAGAGTACA TTGGAAAGTCTTGTTGACTTGGAGAAGCATGGATTTGACATCACTGTGCCACGCTGTAGGTTGAATGAATTGCTTTCAATTAAAGATGGGCAAGGGGAGG TAATAAATGAGTCCAAAGATGCTGAAGAGAAAATACGAGTGCATACTGATGAGAAAAGAAAGCTGGAAGAGAAGATGAGCGATATTGAGAAGAAGATAAC TGAGCTACAGGAAGAACTTGCTTTAACGAAGGCAAAGATGGATGTTAAGGGCCTTGATATTTCCAAGATGCAATCCCATGCTGATGCCATAAATGAACGG ATAAAAAATGCCCGGGATCATTTTGTAAAAGTAGCCTCCGCCCCTTGGAAATCTCCCTGA
AA sequence Show only first row Show all	>Potri.002G192300.6 pacid=42776865 polypeptide=Potri.002G192300.6.p locus=Potri.002G192300 ID=Potri.002G192300.6.v4.1 annot-version=v4.1 MVVLDSNPEPQPQPQQNPRQQDQTILFNKGEEVEVSSDEEGFRGAWYLATILEFPKPQSQAAVKSASKKKRKAIVQYKTLVTEDGSAPLVEQVDPHLIRP LPPQYLLKNGGLFQENEAIDASLRDGWWSGVVKKVLDGGSRYMVYFDNPPDVVEFEAKDLRLHLDWVDGNWVQPQMQRQATGSVFSSGTEVEVNLEKDNV RDIWLPAVVIKENEDKTFLVKCLSARNSDEAGPMKTIVDFLHIRPTPPLYADRNYELLERVDTRYGFGWRSGVITKLLAGRRYNVFFKHGNEDKELSHSK IRPHLEWVDGKWISKSKEVRIVSDSQGQFVGTDSSDNPDVAVKLKSSSAAEDKTKEKTVSTNIRDPTEQSMHSGEKSVKKLKLTLYNGGGSCSSASSMLT DVDTTEAPLSVTVLQSRKIPIEMSSNEKLCGFTTSKTGGKRARCIEKHMVDAQPSNKTENFSAGKTTKTKLHKVLELDCPKVDIVTRKGRATKSPFRSPN SSAAVKDGDAVEVTVQGISESDVKTKEIEVPLIIGLKAIEGIYQDDKEMLKLMRDQKKGLNDSAKDKNMEYVGSSQRRKRGRPRKLIINSKALVASKDFG SVDLADEVVQVVIKDLTTNEVEWPTQARAEPKVSQNSSREKSSEISKTDFMSREADADAAASKNVADDDQPLSTWFGNMHGSAGLEELRLSTGRIASGVS EAREKKVVAVQSCTVDPKSNDTMVENQLVPFVKKSPVWNTIESMEVFQIIPQKPHFHPLTECKEEYREGSAIGIMVTFASLFEKISSLQFDDCRSILEST LESLVDLEKHGFDITVPRCRLNELLSIKDGQGEVINESKDAEEKIRVHTDEKRKLEEKMSDIEKKITELQEELALTKAKMDVKGLDISKMQSHADAINER IKNARDHFVKVASAPWKSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26540			Agenet domain-containing prote...		Potri.002G192300 [exp]	0	1
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	20.97	0.8174
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432366 [exp]	23.47	0.8359
AT4G27300			S-locus lectin protein kinase ...		Potri.011G126251 [exp]	31.85	0.8499
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.001G378900 [exp]	32.74	0.8139
AT5G65050	MADS	MAF2, AGL31	MADS AFFECTING FLOWERING 2, AG...		Potri.003G170200 [exp]	32.92	0.7800
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.011G060000 [exp]	37.34	0.8213
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020432 [exp]	37.94	0.8207
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036700 [exp]	41.71	0.8356
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Potri.008G088100 [exp]	44.54	0.8147
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220301 [exp]	52.99	0.8398

Compare expression of checked genes

Potri.002G192300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.