Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01950 600 / 0 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 571 / 0 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT1G06520 423 / 4e-142 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT2G38110 352 / 1e-115 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT5G06090 345 / 8e-113 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G01610 343 / 5e-112 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 338 / 2e-110 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT4G00400 333 / 2e-108 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11325 210 / 1e-62 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202200 [exp] 437 / 2e-148 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.016G063900 [exp] 359 / 2e-118 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 355 / 5e-117 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 354 / 2e-116 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G113100 [exp] 348 / 2e-114 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 341 / 1e-111 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 334 / 6e-109 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 327 / 3e-106 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001449 [exp] 540 / 0 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 523 / 0 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10029839 [exp] 448 / 8e-154 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10010934 [exp] 431 / 1e-145 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 424 / 3e-143 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 419 / 6e-141 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 361 / 6e-119 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 352 / 2e-115 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 351 / 3e-115 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 330 / 5e-107 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G192600.1 pacid=42777096 polypeptide=Potri.002G192600.1.p locus=Potri.002G192600 ID=Potri.002G192600.1.v4.1 annot-version=v4.1 ATGCACAACACCTCCAGCGATATTGGCACTGTGAACGCTGAAAAAATGTTTCCAAGGGCGTTTTTCTTCCAAAACCTCTTCTTCTTTTTCTTTCGCATTA TCTCTAGACAGTTCAGGAACCCAAAAGGTCTGCAAAGAAGTTTGAGCAATGTCCATGCAGCCCATGGCAAATACCAGAAGTATGCTTCTCTTTCTTTTAG ATCAGACTTATCAGCCAAAACAATGGTCTTTAATGTGGAAGGAACTTTGCTGAAATCATACTCTTTGTTTCCTTACTTTATGCTTGTGGCTTTCGAAGCT GGAAGCTTATTAAGGGCCCTTATTCTCTTTCTGTTATACCCATTTATTTGCTTAGTTGGTCAAGATATGGGCTTAAAGATAATGGTAATGGTTTGCTTCT TCGGGATAAAAAAAGAGAGCTTTAGGGTTGGAAGTGCTGTTTTGCCGAAGTTTTTCTTGGAGGATGTTGGGTTGGAGGCACTTGAGGAATTGAAAAGAGG AGGGAGGAAAGTGGCCGTGAGTGATCACTTCCCTCAAGTCATGATTGAAAGTTTCCTAAGAGACTACTTGGATGTTAACTGTGTTGTTGGGAGGGAGCTG AAGACGGGCTGTGGGTATTTTTTGGGACTCTTGGAAGAGAAGAAGAAAGACATGCTAAACTTGGAGGAGATACTCGGAAAGGATAGTGTTATTAGCCATG ACGATATCATTGGCATTAGTCAGTTAAATAGCTCTCTTGATCATCCTTTATTTTCCCATTGCAAGGAGATTTACTTGGTCAGAAGGGTAGACAAGAGAAG CTGGCAACACCTCCCAAGAGACAGATACCCAAAACCCCTTATTTTCCACGACGGTAGACTTGCTCTAAGACCAACCCCACTGGCCACTCTAGCATTATTC ATGTGGGTCCCTTTCGGCTTCGTCCTTGCCTTGATCAGGGCCGCTGTGGCTTTATCTCTACCATACAGCATGTCCATTCCCACACTAACTTTCACTGGGG TTAAAGTAGCGATATCAAAACCCAAATTGTCTTCTTCAGTGCTTCCAAGCTCAAAAGAAAATGAATCCAAAAAAGGCCTCCTTTATGTCTGCAATCATAG AACATTACTAGATCCTCTGTACCTTTCTTTCGCCTTAAAGAAAAATTTCACTGCTGTCACATACAGCCTTAGTAGATTGTCAGAGATACTGTCACCAATC AGGACCGTTCGCTTAACTCGTGATCGTGAACAAGATGCAAAGATGATGGAGAGACTGTTAAATCAAGGGGATCTTGTGGTTTGCCCAGAAGGTACCACAT GTAGAGAGCCATACCTCTTGAGATTTAGCCCGTTATTTGCTGAGATGAGCGATGACATAGTGCCTGTGGCTTTGGACACCCATGTGAGCATGTTTTATGG CACAACTGCCGGTGGGCTCAAGTGCCTAGACCCACTTTTCTTCCTCATGAACCCTCGACCAAGTTACACTATTCAGTTGCTCGACGGCGTATCTGGACTG TCCACATGCCAGGACAGTGATAAATCAAGATTTGATGTTGCCAATTACGTGCAGAGTGAGATTGGCAAGGCATTGAGCTTTGAGTGCACCAAGCTTACAA GAAGAGACAAGTACTTGATTTTAGCTGGCAATGAAGGCATAACTTGCAACCAACGGTGA
AA sequence Show only first row Show all	>Potri.002G192600.1 pacid=42777096 polypeptide=Potri.002G192600.1.p locus=Potri.002G192600 ID=Potri.002G192600.1.v4.1 annot-version=v4.1 MHNTSSDIGTVNAEKMFPRAFFFQNLFFFFFRIISRQFRNPKGLQRSLSNVHAAHGKYQKYASLSFRSDLSAKTMVFNVEGTLLKSYSLFPYFMLVAFEA GSLLRALILFLLYPFICLVGQDMGLKIMVMVCFFGIKKESFRVGSAVLPKFFLEDVGLEALEELKRGGRKVAVSDHFPQVMIESFLRDYLDVNCVVGREL KTGCGYFLGLLEEKKKDMLNLEEILGKDSVISHDDIIGISQLNSSLDHPLFSHCKEIYLVRRVDKRSWQHLPRDRYPKPLIFHDGRLALRPTPLATLALF MWVPFGFVLALIRAAVALSLPYSMSIPTLTFTGVKVAISKPKLSSSVLPSSKENESKKGLLYVCNHRTLLDPLYLSFALKKNFTAVTYSLSRLSEILSPI RTVRLTRDREQDAKMMERLLNQGDLVVCPEGTTCREPYLLRFSPLFAEMSDDIVPVALDTHVSMFYGTTAGGLKCLDPLFFLMNPRPSYTIQLLDGVSGL STCQDSDKSRFDVANYVQSEIGKALSFECTKLTRRDKYLILAGNEGITCNQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	0	1
					Potri.001G320601 [exp]	7.14	0.9747
AT5G63020			Disease resistance protein (CC...		Potri.013G007400 [exp]	7.34	0.9692
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	8.30	0.9843
AT5G26810			Pectin lyase-like superfamily ...		Potri.013G008100 [exp]	9.74	0.9732
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009000 [exp]	9.79	0.9748
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.013G108300 [exp]	10.09	0.9669
					Potri.010G129867 [exp]	10.19	0.9496
					Potri.012G100300 [exp]	10.53	0.9655
AT4G31980			unknown protein		Potri.003G206201 [exp]	12.24	0.9749
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.015G087700 [exp]	13.41	0.9685

Compare expression of checked genes

Potri.002G192600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.