Plant FIBer expression Database

Potri.002G192800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62330 468 / 1e-162 Zinc knuckle (CCHC-type) family protein (.1)
AT5G22040 47 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G118100
[exp]
779 / 0 AT3G62330 424 / 1e-145 Zinc knuckle (CCHC-type) family protein (.1)
Potri.010G244600
[exp]
57 / 8e-09 AT5G22040 162 / 3e-48 unknown protein
Potri.008G015500
[exp]
54 / 7e-08 AT5G22040 150 / 9e-44 unknown protein
Potri.008G001700
[exp]
53 / 1e-07 AT5G22040 155 / 7e-46 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010000
[exp]
516 / 0 AT3G62330 421 / 3e-144 Zinc knuckle (CCHC-type) family protein (.1)
Lus10025019
[exp]
508 / 2e-178 AT3G62330 415 / 1e-141 Zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G192800.3 pacid=42777510 polypeptide=Potri.002G192800.3.p locus=Potri.002G192800 ID=Potri.002G192800.3.v4.1 annot-version=v4.1
ATGGCAACACGGCCGAATCCAGATATTGATGATGATTTTAGTGAAATTTACAAGGAGTATACTGGTCCTCCGAGTTCTACTGTCAGTAATGCACATGATA
GGGAAAAGGTAAATAAAAGATCTCATGTGGACTCTGATGAGGAAGAGGAAACTCCTGACCCAAATGCTGTCCCAACTGATTTTACGAGCCGAGAAGCTAA
GTTTTGGGAAGCTAAATCAAAGGCTACAGAGCGGAATTGGAAGAAGAGAAAAGAGGAAGAAATGATTTGTAAAATATGTGGAGAATCAGGTCATTTTACT
CAGGGATGCCCCTCAACTCTTGGGGCAAATCGCAAGTCTCAAGATTTCTTTGAAAGGGTTGCAGCAAGAGACAAGCATATAAAAGCTCTATTTACTGAGA
AAGTGATACAGAGGATTGAGAAGGACAACGGTTGCAAAATCAAAATGGAGGAGAAATTTATAATTGTCAGTGGAAAGGATAGGTTAATCTTGGCAAAAGG
TGTTGATGCTGTGCACAAGGTGATCAAGGGGGAGGGTGATCAGAAGGGCTCTTCTAGTTCTCACAAGAGTAGATCTAGGTCCCCTGAGAGAAGTCCTGTT
GGTTCACGGTTGCGACGCTCTGATTCCCAAAGAGGTCACCCACATGATACACCGCAATATCATCAGAGGTTTGGCAGACAAGATAAGATTATGGAAGACC
ATCGTGGGGATCTGCATAAATTCGCAAGGGGTTCTCCACAAGCTTATGGTAATGATGGAGGTAGAAGTCACTCAAGCCATTCTAAATCTCCTGCACGTCC
CCTTTATGCTGGCAACTCGTATGGTTCACATGATGGTCATAGTCATAGCACAGCTGGTTTTAGAACAACAGGGTGGGATACTGAGAGGCGGGGGTCTGAT
TTGCAATCAGGCCATCGATTTGAATACTCTACTTTCCCTCAGACGTTAGAAGAACTGGAGCTAGAGCACAAGAGAGAGGCAATGGAACTTGCTAGAATTT
GTGACAAGGAAGAAGATGATGAAAATTACAAGCATCGTGAGACTATCAGGGAAATTGGAGAGAATTACATGCAGAAATTAGCTATTCTAAGAAGTGCACA
CACAAGACAGTGGGAGGAGTTTCTTCAACAGGATGCCCAAATGCATCAGCAACAGCCTCGGCAGCCAACTTCTGTGTCTGGTTTTGGTGGATATAAACAG
CACTCTTATTCTGAATATGATGCTTCTTCAGCCACTCCTCATTATGCTGGAACCAGTTTAACCATGGATTCAAGGCCCAGATACTCAAATAACATGGAAA
ATTATTCTTCAAGACCTCATGATACATATGGTGAGTTCCAACATCCGAGGCGCGAGGCTTTTGGGAAAGCATACAATCGATACTAA
AA sequence
>Potri.002G192800.3 pacid=42777510 polypeptide=Potri.002G192800.3.p locus=Potri.002G192800 ID=Potri.002G192800.3.v4.1 annot-version=v4.1
MATRPNPDIDDDFSEIYKEYTGPPSSTVSNAHDREKVNKRSHVDSDEEEETPDPNAVPTDFTSREAKFWEAKSKATERNWKKRKEEEMICKICGESGHFT
QGCPSTLGANRKSQDFFERVAARDKHIKALFTEKVIQRIEKDNGCKIKMEEKFIIVSGKDRLILAKGVDAVHKVIKGEGDQKGSSSSHKSRSRSPERSPV
GSRLRRSDSQRGHPHDTPQYHQRFGRQDKIMEDHRGDLHKFARGSPQAYGNDGGRSHSSHSKSPARPLYAGNSYGSHDGHSHSTAGFRTTGWDTERRGSD
LQSGHRFEYSTFPQTLEELELEHKREAMELARICDKEEDDENYKHRETIREIGENYMQKLAILRSAHTRQWEEFLQQDAQMHQQQPRQPTSVSGFGGYKQ
HSYSEYDASSATPHYAGTSLTMDSRPRYSNNMENYSSRPHDTYGEFQHPRREAFGKAYNRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.002G192800
[exp]
0 1
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G271200
[exp]
2.44 0.8557
AT2G27610 Tetratricopeptide repeat (TPR)... Potri.004G184800
[exp]
2.64 0.8206
AT5G64420 DNA polymerase V family (.1) Potri.009G079900
[exp]
7.74 0.8189
AT1G33390 ATFAS4 FASCIATED STEM 4, RNA helicase... Potri.002G201400
[exp]
16.88 0.8101
AT4G00590 N-terminal nucleophile aminohy... Potri.014G080600
[exp]
18.02 0.8131
AT2G36720 Acyl-CoA N-acyltransferase wit... Potri.016G097300
[exp]
18.81 0.8276
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G024900
[exp]
22.62 0.8351
AT3G07060 EMB1974 embryo defective 1974, NHL dom... Potri.002G241366
[exp]
24.97 0.8100
AT1G70650 Ran BP2/NZF zinc finger-like s... Potri.010G107400
[exp]
39.49 0.7849
AT1G33410 NUP160, SAR1, A... ARABIDOPSIS NUCLEOPORIN 160, S... Potri.001G078600
[exp]
40.29 0.8116

Potri.002G192800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.