Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FCA.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) AT4G16280 261 / 9e-81 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT1G03457 140 / 2e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G03110 130 / 4e-33 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT3G52150 81 / 7e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G34110 74 / 7e-14 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 73 / 2e-13 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G13224 70 / 6e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 70 / 1e-12 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G55550 69 / 3e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147900 [exp] 290 / 1e-89 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.014G135540 [exp] 137 / 3e-35 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 136 / 3e-35 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.014G025400 [exp] 82 / 3e-16 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 80 / 2e-15 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G051500 [exp] 79 / 4e-15 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 76 / 1e-14 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 76 / 2e-14 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G139700 [exp] 76 / 4e-14 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029574 [exp] 282 / 8e-87 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 264 / 2e-80 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 260 / 4e-79 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 193 / 2e-56 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10005926 [exp] 124 / 2e-30 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10010370 [exp] 81 / 1e-15 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 79 / 3e-15 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10023723 [exp] 71 / 3e-13 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027886 [exp] 72 / 5e-13 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 71 / 1e-12 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0680 [poplar] [flax] WW PF00397 [poplar] [flax] WW WW domain
Representative CDS sequence Show only first row Show all	>Potri.002G192900.5 pacid=42778079 polypeptide=Potri.002G192900.5.p locus=Potri.002G192900 ID=Potri.002G192900.5.v4.1 annot-version=v4.1 ATGGAAAGACACAGAGGAGACCATCAACGGCATCACGAGCTTCAACATCCCAACTTTAACCAGCACCACCCCGACCAGAACCAATTCAACAACCACAACC ACAGCCATTACAATTACGACTCTAATCAGCAGATGAGTGGTGAAGCTAACGAGCCATTTATTGGTGGATTATTCCGCCCCAATGGCCGCAAAAGAGGCCG ATTCCATTCTTCAGATTACGGTGATGGTGGTGTTAATGCAAAGCTTTATATCGCACCAATTCCAAGAACAACGACTGAAGAAAATATCCGCTCTTTGTTT GAAGAACATGGAAGTGTTGTTGAGGTTGTTTTACCCCGGGATAAGCGGACTGGGCAACAACAAGCATATTGTTTTGTGAAATACGCGACATTTGAGGAAG CTGACAGGGCTATTAGGGCTTTGCATAATCAGCATACGATTCCTGGGGAAGTGGCTCCATTTAAAGTCAGATATGCTGATGGAGAACGGGAACGCCCAGT TGCCCGCTGTTCCATGGTAGGGGGATTTGTGGACAAGCTCTATGTTGGTTCTATAAACAAGCTGGCTTCAAAACAGGAAATTGAGGAGATATTTTCTCCA TATGGTCATGTGGAAGATGTCTACATTGCACGTGATGAGCTGAAGCAAAGTCGTGGATGTGCATTTGTTAAGTTTGCTCACAGAGATATGGCACTGGCAG CAATCAAAGGATTAAATGGAACTCTTACCATGAGAGGGTGTGATCAGCCATTGATTGTTCGTTTTGCAGATCCCAAAAAACCTAAGACTGGAGAATTAAG AGGCAGTTTCGCATTTGGTGGTCCAAATTTTGGTCCCTGCTCTCAACAACCAATGATCAGGCCAGCACCTGGGTGTTTTTTGCCTAACGCTTCATTTTCT ATGCAACAAACCTCAACAACTGGAGTTCCACAAGCTGTTGCCCATGCAGCAAAACAGGAATTTGCATCTCCTCATATCACAGAGCAACCACTTTCTTCAA TAAAGCACTCACCTTCACAGTTGTCTCAGATGCCATTACAGCATATGCAGGCTCCAGAGAAATGTTTTCAATCACCTCAACAAGCAATTTTTGATACACA TAAACAGACCCAAATTTTAGAGCAGCAGCAGAATCAACAGCTTGCCCTGCAGGAGCATGTTTTCCTGCAGCCAGCTTGGACTGGAAACATTCAACCAGCT AGTCGTAATTCTGTCACCTCTGCAGTGCCTCCCAGTCCCCAAATCGTAGATCCAGGAGAGTGTGATTGGAGTGAGCATTCCTGCCCAGATGGATACAAGT ACTATTATAATTGTATCACCTGTGAAAGTAGATGGGAGAAGCCTGTGGAGATCACCTTATTTCTGCAACAATTCCAGGAAGAGAAAAGGCTGCATGGTTC AAACCAGCAATCTTCCCTCTCGCCAGTTTGTTCTGCTGAGGAAGTTGATCAAACACAAAAGGAACTAGATCGTGTGCAAATACAATCAGAAACAAGTCCT GTTATTGATCCCTCCTGTGTTTAA
AA sequence Show only first row Show all	>Potri.002G192900.5 pacid=42778079 polypeptide=Potri.002G192900.5.p locus=Potri.002G192900 ID=Potri.002G192900.5.v4.1 annot-version=v4.1 MERHRGDHQRHHELQHPNFNQHHPDQNQFNNHNHSHYNYDSNQQMSGEANEPFIGGLFRPNGRKRGRFHSSDYGDGGVNAKLYIAPIPRTTTEENIRSLF EEHGSVVEVVLPRDKRTGQQQAYCFVKYATFEEADRAIRALHNQHTIPGEVAPFKVRYADGERERPVARCSMVGGFVDKLYVGSINKLASKQEIEEIFSP YGHVEDVYIARDELKQSRGCAFVKFAHRDMALAAIKGLNGTLTMRGCDQPLIVRFADPKKPKTGELRGSFAFGGPNFGPCSQQPMIRPAPGCFLPNASFS MQQTSTTGVPQAVAHAAKQEFASPHITEQPLSSIKHSPSQLSQMPLQHMQAPEKCFQSPQQAIFDTHKQTQILEQQQNQQLALQEHVFLQPAWTGNIQPA SRNSVTSAVPPSPQIVDPGECDWSEHSCPDGYKYYYNCITCESRWEKPVEITLFLQQFQEEKRLHGSNQQSSLSPVCSAEEVDQTQKELDRVQIQSETSP VIDPSCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	0	1	FCA.3
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	2.23	0.8644
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.001G021500 [exp]	3.87	0.8460
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	5.19	0.8115
AT1G08730		PCR43, ATXIC, X...	MYOSIN XI C, Myosin family pro...		Potri.002G041800 [exp]	5.29	0.8323
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	6.16	0.8553
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	8.94	0.8410
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	9.00	0.8278
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	14.49	0.8153
					Potri.009G112922 [exp]	14.86	0.8237
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	16.52	0.8036

Compare expression of checked genes

Potri.002G192900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.