Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31400 1191 / 0 GUN1 genomes uncoupled 1 (.1) AT1G74850 271 / 5e-78 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 263 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 224 / 5e-62 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 214 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 214 / 2e-59 RPF2 rna processing factor 2 (.1) AT3G22470 207 / 4e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 204 / 4e-57 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 206 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 204 / 2e-56 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G118500 [exp] 1640 / 0 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 292 / 1e-85 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.009G092100 [exp] 246 / 2e-69 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 240 / 2e-67 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 225 / 1e-62 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 226 / 2e-62 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 212 / 7e-59 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 211 / 9e-59 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G098400 [exp] 214 / 2e-58 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022290 [exp] 1023 / 0 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 1014 / 0 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10033127 [exp] 278 / 2e-80 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 258 / 7e-73 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 253 / 5e-72 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 224 / 7e-62 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 219 / 2e-59 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 217 / 3e-59 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042068 [exp] 212 / 2e-57 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016009 [exp] 209 / 7e-57 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G193900.4 pacid=42777120 polypeptide=Potri.002G193900.4.p locus=Potri.002G193900 ID=Potri.002G193900.4.v4.1 annot-version=v4.1 ATGGCGTCAACGCCACCGCACTGTTCAATCACAGCAACGACTAAGCATTATCAAAACCACCCCTATCCACACAACCAGTTAAAAAACCACCGTCAAACCC ACAACCAAAACCCCCACCAAAGATGGACTTCTAATCAAAGAGTCTCTCTTGCCAAACCCCCTCTTCCTCCTTCTCGCAATGCACCAAAACCCGCCGCCAC CACCACCACCACCACCACCCAACACCCCCAAATCCACCCCACCTTCTCTTCCTTTCAACCCCCCAAATCCGAACTTGTCTCCGATTTCCCAGGTCGCCGC TCCACCCGCTTCGTTTCTAAGCTCCACTTCGGGCGCCCCAGAACAACCATGGGCACTCGCCACACCTCAGTCGCCCAAGAAGCTCTCCAGAACGTAATTG AGTATGGGAAAGACGAGAGGGCCCTTGAAAATGTGCTGCTTAATTTCGAGTCTCGTCTTTCTGGGTCGGATGATTATGTTTTCTTGCTTCGGGAGCTTGG TAATCGAGGAGACTGTAAAAAAGCCATTTGTTGCTTTGAATTTGCAGTGAAAAGGGAGAGGAAGAAGAATGAACAAGGTAAGTTGGCGAGTGCCATGATT AGTACTCTTGGTAGGTTAGGTAAAGTAGAGATGGCTAAGACCGTTTTTAAGGCTGCTCTTACTGAAGGCTATGGTAATACTGTTTATGCTTTCTCTGCTA TAATCAGTGCTTATGGTAGAAGCGGTTATTGTAATGAGGCTATCAAGATTTTTTATTCGATGAAAGATTACGGATTGAAGCCCAATTTGGTTACTTATAA TGCTGTTATTGATGGGTGTGGGAAAGGGGGTGTGGAGTTTAAGCGAGTATTGGAGATTTTCGACGAGATGTTGAGAAATGGAATGCAGCCAGATCGAATT ACGTTCAACTCGCTTCTTGCTGTGTGTAGTAAAGGAGGGTTGTGGGAAGCGGCGAGGAGCTTGTCTTGTGAGATGGTGAATAGAGGGATTGATCAAGATA TTTTTACTTATAATACGCTTCTGGATGCTGTTTGTAAAGGTGGGCAACTTGACATGGCTTTTGAGATCATGTCTGAGATGCCCGCCAAAAATATATTGCC TAATGTCGTGACTTATAGTACCATGATTGATGGATATGCTAAGGCTGGTAGATTAGATGATGCGCGCAATTTGTTTAACGAAATGAAGTTTCTGGGTATA AGTTTGGATAGAGTTTCTTATAACACCTTGCTTTCTATTTATGCTAAGCTTGGTAGGTTTGAGGAAGCTATGGATGTTTGCAGGGAGATGGAAAATTCTG GGATTAGGAAAGATGTTGTGACTTATAATGCGCTTTTGGGTGGGTATGGGAAACAATACAAGTATGACGTGGTTAGAAAAGTGTTTGAAGAGATGAAAGC CAGGCATGTATCACCCAATCTATTAACTTACTCAACTTTGATTGATGTGTATTCAAAAGGTGGTTTGTATAGGGAAGCAATGGATGTTTTTAGGGAGTTT AAGAAGGCTGGGTTGAAGGCTGATGTTGTTCTTTATAGTGCATTGATAGATGCCTTGTGCAAGAATGGGTTGGTGGAGTCTGCTGTGTCTTTGCTTGATG AGATGACCAAGGAGGGAATTAGGCCTAATGTGGTCACTTACAATTCCATTATAGATGCATTTGGCCGGCCAGCAACCACAGAATCTGTGGTTGATGATGC TGGCCAGACCAGTGAGTTGCAAATTGATTCTCTATCTTCAAGTGCTGTTGAGAAGGCCACTAAAAGTCTGGTGGCTGACAGGGAGGACAACCGGATCATA AAGATTTTTGGGCAGCTTGCTGCTGAAAAGGCAGGTCAAGCAAAGAACAGTGGCGGGCAGGAAATGATGTGCATTTTGGGAGTCTTTCACAAGATGCACG AGCTGGAAATCAAGCCAAATGTGGTCACATTTTCAGCCATTTTGAATGCTTGCAGTCGTTGCAATTCCTTTGAAGAGGCTTCAATGTTACTGGAGGAGCT CCGGTTATTTGATAACCAGGTTTATGGCGTGGCCCATGGACTTCTTATGGGTTATAGAGAAAATGTTTGGGAGCAAGCACAATCTCTCTTTGATGAAGTA AAATTGATGGACTCTTCGACAGCATCTGCCTTTTACAATGCCTTGACTGACATGTTATGGCACTTCGGTCAGAAAAGGGGTGCACAACTGGTTGTGCTTG AAGGGAAACGTCGCCAAGTGTGGGAGAATGTGTGGTCTGAGTCTTGCTTAGATTTGCATCTAATGTCTTCTGGGGCTGCTCGGGCAATGGTGCATGCATG GTTGCTGAATGTACGTGCTATTGTGTTTGAGGGTCATGAGGTGCCAAAATTATTGAGCATTTTGACTGGATGGGGCAAACACAGCAAAGTAGTTGGTGAC AGTACGCTAAGGCGAGCTGTTGAGGCCCTTCTCATGGGCATGGGTGCACCCTTTAGGTCAGCCAAATGCAACTTAGGTCGACTTATATCAACAGGATCTG TTGTTGCTTCCTGGTTAAGAGAATCTGGAACGCTAAAAGTTCTTGTACTTCATGATGACAGAACGCATCAAGAAAATTTGAGGTTTGGTCAAATCTCTAA TTTGCAAATGCTTCAATTGTAG
AA sequence Show only first row Show all	>Potri.002G193900.4 pacid=42777120 polypeptide=Potri.002G193900.4.p locus=Potri.002G193900 ID=Potri.002G193900.4.v4.1 annot-version=v4.1 MASTPPHCSITATTKHYQNHPYPHNQLKNHRQTHNQNPHQRWTSNQRVSLAKPPLPPSRNAPKPAATTTTTTTQHPQIHPTFSSFQPPKSELVSDFPGRR STRFVSKLHFGRPRTTMGTRHTSVAQEALQNVIEYGKDERALENVLLNFESRLSGSDDYVFLLRELGNRGDCKKAICCFEFAVKRERKKNEQGKLASAMI STLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDGCGKGGVEFKRVLEIFDEMLRNGMQPDRI TFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGI SLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREF KKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSSAVEKATKSLVADREDNRII KIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFDEV KLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNVRAIVFEGHEVPKLLSILTGWGKHSKVVGD STLRRAVEALLMGMGAPFRSAKCNLGRLISTGSVVASWLRESGTLKVLVLHDDRTHQENLRFGQISNLQMLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	0	1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	2.44	0.8969
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	7.74	0.8736
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	13.22	0.8786
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	13.78	0.8817
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Potri.014G037200 [exp]	14.79	0.8316
AT3G58570			P-loop containing nucleoside t...		Potri.006G196000 [exp]	15.29	0.8442
AT3G49055			unknown protein		Potri.015G146100 [exp]	16.00	0.8749
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	19.41	0.8688
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	19.44	0.8560
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	20.85	0.8650

Compare expression of checked genes

Potri.002G193900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.