Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62360 1656 / 0 Carbohydrate-binding-like fold (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF13620 [poplar] [flax] CarboxypepD_reg Carboxypeptidase regulatory-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G194000.1 pacid=42779226 polypeptide=Potri.002G194000.1.p locus=Potri.002G194000 ID=Potri.002G194000.1.v4.1 annot-version=v4.1 ATGAAGATGATCGGAGACTTATTTCTCTGCTTATCGATCGCACTAATTTTCTCAATCTCAGCTGTTTCCGCTGATTTGATTAACGGTTGTGGCGGATTCG TCGAGGCGAGTTCTTCTCTGGTAAAGTCAAGGAATCCAAGCGCCACAAAATTGGATTATTCTGACATCACGGTAGAGCTTCGTACTGTAGATGGATTGGT AAAGGAGAGAACACAGTGTGCACCCAATGGTTACTACTTCATTCCAGTCTATGACAAGGGCTCATTTGTTATTAAAATCAATGGACCGGAAGGATGGTCG TGGGACCCGGAAAAATTCCCGGTTGTCGTTGATGATATGGGCTGCAACCGCAATGAAGATATTAATTTTCGATTCACAGGGTTCACTATATCTGGTAGAG TTGTGGGAGCAGTTGGTGGACAGAGCTGTTCTGCAAAGAATGGTGGTCCTTCGAATGTTAATGTTGAACTTCTGTCTCCTAACGATGATCTCATTTATTC TATTGTAACCTCACCAGACGGGAGTTACTTGTTCAAAAATGTTATTCCAGGAAAATACAAAGTTCGTGCTTCACATCCTGATTTGAAAGTTGAAGTTAGA GGTTCCACAGAGGTGGAATTGGGGTTTGAAAATGGCATAGTTGATGACATTTTTTTTGTCCCTGGATATGATCTTCACGGATTTGTGGTTGCTCAGGGAA ATCCAATTTTGGGAGTTCACATTTATCTGTATTCGGATGATGTTGAAAAAGTAGATTGTCCCCAAGGCTCTGGTGAGGACGTGGGGCAAAGAAAGCCTCT CTGTCATGCTGTAACCAATGCTGATGGAATGTTCAGATTTAAATCACTACCATGCGGTCATTATGAGCTTGTTCCATCCTACAAGGGTGAGAATACGGTA TTTGATGTTTCACCTCCTCTCATGTTGGTTTCTGTTGAGCATCAGCATGTAACAGTTCCCCGACAGTTTCAGGTCACAGGATTTTCTGTGGGGGGTCGCA TAGTTGATGGGAATGGCATGGGAGTTGAGGGTGTCAAAATCATTGTTGATGGTCACGAAAGGTCTGCAACTGATAAAGAAGGCTATTACAAGCTTGACCA GGTTACATCAAATCGTTATACGATAGAGGCCAAGAAGGAGCATTACAAGTTCAACAAGTTGAAGGAGTATATGGTTTTGCCAAATATGGCTTCAATTCCA GATATTGCAGCAATCTCCTATGATGTCTGTGGTGTAGTAAGCATGATTGGTTCTGGATACACGGCAAAGGTAGCCTTGACCCATGGACCTGAGAATGTCA AACCTCAAGTCAAACAGACAGATGGAAATGGCAATTTCTGCTTTGAGGTTTCACCCGGTGAGTATCGCTTATCTGCTTTGGCTGTTACACCTGACAGTGC TCCTGGACTTTTGTTTTCACCATCTTATGCTGATGTTATGGTCAAAAGTCCATTGCTGGATGTACAATTTACTCAGGTTCTTGTCAATGTTCATGGTTCT GTTACTTGCAAGGAGAAGTGTGGTCCATCAGTTTCTATCGCCCTTGTGAGATTGGCTGGTAAACATACAGAAGAAAGAAAGTCTGTTAGTTTGACAAATG ATAGTGATGAATTTCTCTTTCAGAATGTCGCGCCTGGAAAATACAGGCTTGAGGTTAAACATGGTTCCTCAAAAGCTGTGCCCAATGAAGATAATTGGTG CTGGGAACAGAGATTCATCAATGTGGATGTTGGTGCTGAGGATGTTGCAGGAATTGCTTTTGTTCAAAAAGGTTACTGGATAAATGTTATCTCAACCCAT GATGTGGATGCTTCCATGATTAAGCCAGATGGTTCGCCCATTGATTTGAAAATCAAGAAAGGTTCACAGAATTTATGCATGGAATCTCCTGGAGTACATG AGCTGCACTTTGTTAACTCCTGTATTTTCTTTGGGAGCTCGCCAATAAAAATTGATACATCAAACCTGCTGCCTATCTATCTGAAAGGAGAGAAGTATCT TCTTAAAGGACAAATCAGTGTCGAGTTAGGCTCAGCTGATGGTGGATATGAATTACCTAATAATATCATTGTAGACATCCTTAATAGTGAGGGCAATCTT TTTGATGGTACCGCTGCCATCCTTGTATCACATGAAGATGATCAAACTGGATCTGCCTTGTTTGAGTACTCTGTGTGGGCTAATCTTGGAGAGAAACTTA CCTTTGTTCCTCGGGACCCTAGGAACAATGGAGAGAAGAAGATCTTGTTTTACCCCAGAGAACAAAATGTTTTGGTGGCAAATGATGGTTGCCAATCTCC AATCCCCCCATCATCTGGCCGAATGGGGCTGTACATAGAAGGATCAGTTTCTCCCCCTCTTTCTGGTGTTCACATAAAGATTATTGCTTCCGAAGACAGC AAAATTACTCCACTCAAGAAAGATGAAATAGCATTTCAAACTGCTACAGGAGTGGATGGTTCTTTTCTTGGGGGCCCTCTATACGATGATATAACTTACA GAGTTGAGGCTTCAAAGCCTGGCTATCATCTTAAACGTGTAGGGCCTCATTCCTTTTCTTGCCAGAAGCTAGGTCAAATTTCTGTACACATATACTCCAA AGATGATTCTAATGAACCCATTCCTTCTGTGCTATTGTCATTGAGCGGTGATGATGGTTATAGGAACAACTCAATATCTGGGGCTGGTGGAACTTTCCAC TTTGATAACTTATTTCCTGGCACTTTCTATTTGCGTCCTCTACTGAAGGAGTATGCTTTCTCGCCATCAGCTCAAGTAATAGAACTTGGTTCTGGGGAGT CTAGAGAAGTCACTTTCCATGCCACCCGTGTTGCTTACAGTGCTACAGGTACTGTCACACTATTGTCTGGCCAGCCAAAAGAAGGTGTCTCAGTTGAAGC TCGGTCTGTGTCAAAAGGTTACTATGAGGAGACAGTAACTGATTCGTCTGGAAGTTATAGGCTGAGAGGGCTTGTACCTGAGGCAACCTATGTAATTAAA GTAGTAAAAAAGGATGGCTTGGGTACCAATAGAATTGAGCGTGCATCACCTGAATCTGTTACTATTCAGGTTGGATCAGGGGATATAAGGGATTTGGATT TTGTGGTCTTTGAACAGCCAGAAGTGACCATTTTAAGTTGCCACGTGGAAGGACAGAGAATGAAAGAACCACAGTCACAGCTATTGGTTGAGATCAAGTC GGCAAGTGATTCATCCAAGACTGAGACTGTCTTTGAGCTCCCAGTGTCCAACTTCTTTCAAGTGAAGAATTTACCCAAGACTAAACACCTCCTGCAGCTT CGAACAAGTCTGCAGTCAAGAACCCATAAATTTGAGTCGGAGATTATTGAGGTTGACCTTGAGAGGACAGCCCAGATCCATGTGGGCCCACTGCGATATA GTTTTGAGGAGGATCACCAGAAACAGGAATTAACTCCAGCACCAGTGTTCCCTCTCATAGTTGGTGTTTCTGTAATTGCCCTTTTCATTAGCATGCCAAG ATTGAAGGATCTGTATCAAGCCACTGTGGGAATACCGACACCAGGATTTATGACAATTGCTAAGAGGGAACCCCGAAAGCCAGCTGTGAGAAAAAAGGCA TACTGA
AA sequence Show only first row Show all	>Potri.002G194000.1 pacid=42779226 polypeptide=Potri.002G194000.1.p locus=Potri.002G194000 ID=Potri.002G194000.1.v4.1 annot-version=v4.1 MKMIGDLFLCLSIALIFSISAVSADLINGCGGFVEASSSLVKSRNPSATKLDYSDITVELRTVDGLVKERTQCAPNGYYFIPVYDKGSFVIKINGPEGWS WDPEKFPVVVDDMGCNRNEDINFRFTGFTISGRVVGAVGGQSCSAKNGGPSNVNVELLSPNDDLIYSIVTSPDGSYLFKNVIPGKYKVRASHPDLKVEVR GSTEVELGFENGIVDDIFFVPGYDLHGFVVAQGNPILGVHIYLYSDDVEKVDCPQGSGEDVGQRKPLCHAVTNADGMFRFKSLPCGHYELVPSYKGENTV FDVSPPLMLVSVEHQHVTVPRQFQVTGFSVGGRIVDGNGMGVEGVKIIVDGHERSATDKEGYYKLDQVTSNRYTIEAKKEHYKFNKLKEYMVLPNMASIP DIAAISYDVCGVVSMIGSGYTAKVALTHGPENVKPQVKQTDGNGNFCFEVSPGEYRLSALAVTPDSAPGLLFSPSYADVMVKSPLLDVQFTQVLVNVHGS VTCKEKCGPSVSIALVRLAGKHTEERKSVSLTNDSDEFLFQNVAPGKYRLEVKHGSSKAVPNEDNWCWEQRFINVDVGAEDVAGIAFVQKGYWINVISTH DVDASMIKPDGSPIDLKIKKGSQNLCMESPGVHELHFVNSCIFFGSSPIKIDTSNLLPIYLKGEKYLLKGQISVELGSADGGYELPNNIIVDILNSEGNL FDGTAAILVSHEDDQTGSALFEYSVWANLGEKLTFVPRDPRNNGEKKILFYPREQNVLVANDGCQSPIPPSSGRMGLYIEGSVSPPLSGVHIKIIASEDS KITPLKKDEIAFQTATGVDGSFLGGPLYDDITYRVEASKPGYHLKRVGPHSFSCQKLGQISVHIYSKDDSNEPIPSVLLSLSGDDGYRNNSISGAGGTFH FDNLFPGTFYLRPLLKEYAFSPSAQVIELGSGESREVTFHATRVAYSATGTVTLLSGQPKEGVSVEARSVSKGYYEETVTDSSGSYRLRGLVPEATYVIK VVKKDGLGTNRIERASPESVTIQVGSGDIRDLDFVVFEQPEVTILSCHVEGQRMKEPQSQLLVEIKSASDSSKTETVFELPVSNFFQVKNLPKTKHLLQL RTSLQSRTHKFESEIIEVDLERTAQIHVGPLRYSFEEDHQKQELTPAPVFPLIVGVSVIALFISMPRLKDLYQATVGIPTPGFMTIAKREPRKPAVRKKA Y

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62360			Carbohydrate-binding-like fold...		Potri.002G194000 [exp]	0	1
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	1.41	0.9163	DEX1.1
AT5G07720			Galactosyl transferase GMA12/M...		Potri.012G068300 [exp]	1.73	0.9121
AT1G34130		STT3B	staurosporin and temperature s...		Potri.015G028300 [exp]	3.16	0.9131
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076550 [exp]	4.00	0.8576
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	11.66	0.8572
AT4G16180			unknown protein		Potri.010G146800 [exp]	11.83	0.8115
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	12.64	0.9022
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	15.16	0.8167
AT3G03420			Ku70-binding family protein (....		Potri.001G339900 [exp]	17.14	0.8808
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.017G112200 [exp]	22.27	0.8353

Compare expression of checked genes

Potri.002G194000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.