Plant FIBer expression Database

Potri.002G194100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47300 734 / 0 ribonuclease Ps (.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001156
[exp]
822 / 0 AT2G47300 736 / 0.0 ribonuclease Ps (.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06978 POP1 Ribonucleases P/MRP protein subunit POP1
PF08170 POPLD POPLD (NUC188) domain
Representative CDS sequence
>Potri.002G194100.3 pacid=42777057 polypeptide=Potri.002G194100.3.p locus=Potri.002G194100 ID=Potri.002G194100.3.v4.1 annot-version=v4.1
ATGGCTGTTGATGGAAGCAAAAAATCTAAAGTATCAACAGCTCCACCTAGAAAAATCAATGTTCAAAAATTTGCAGAAACCCGGGCATCTGAACTGGAGA
GTCTTCACACAATCGTATCAAACCGGCTAAACAACAATTTCCGGTCTCAAAGAAACAAGAGAAGAAGAACCACTGCTTATGAAAATCAAGCTGCGAAAAA
GAGACATCGAAAAAGACGTAATTTAGGCCTCCTCGGTAAAGCCAATGATGACCTGTCGTCGGCTTCAGAAAATAAAGAGCCAAGGAAAGTCCCTCGCCGA
GTTCGCAGGAGAATTGAGCTGAAAAAGAATCCAGAATCTGGTTTTGCTACTTCCGGCGATGGCACCAGGAGATTGAGAACTCACGTCTGGCATGCCAAAC
GTTTTACAATGACTAAGCTTTGGGGATTTCACCTTCCTCTTGGTTTGCACGGCAGAGGGAGGGGATCCAGGGCTCTATTGAAGTGGTACAGAGACGGAGC
GGTTGTGCATGATGCAAGCTACCATACTGCTGTCCAGTTGAAGGGTCCAGAGGAGTCATTAATTTCAATTCTAAATATGGTACTAGTGCCTTCTCCATCA
GCTCAATCTCGCGATATTGCCAAGTCTATTCTTACTGGTGTTATCTATGGCACTGCTATGCTGCATCATGCTGGAGCACCTGTTTCTCAGCCGATAGCTC
CTGTGAACTATATGTGGCGACCTTCTTGTCTTCGCAATAGAGAAAATGGCAATAACGAACATAGTTCTGGTGGATTTAATGAAACTCAAATCTCTGATGC
TTGTTCTTCCCATCGTCAACTTTGGGTGTGGATACATGCATCAGCTTTTAGCGAGGGATATGATGCTCTGAAATTCGCTTGTCAGAAACAGATGAATGAG
AGTGGCATTTTGATCAATTGTTTGTCACTCGAAGGCCAGCTTGCAAAGTTAGAAGTAATGGGATCACAGGCATCGAAACTTTTACAAAAGACATTACATC
CTTTTTCTTGTAATTCAGATAATTCTTGGCAATTGAGGAACTGCTCTGTTTTGGAAGTTGATGGTGACTCTGAGTTGAAGAAATCTATATTTCAAAGCAA
GAACATTTCTCCTTGTTCAGTTTTATCTCTTGCTGTCAAGGATCCTCGTTCACTGCCTGTAAATATTGCTGACATTCCCAAGCCAACCCCTACTAGTGTA
CTCAATAATGTTCCAGAAGATGAAGCAAAAGAGCATGATGCCTTAACCGTAAATTTTGGAAATGGTGAAAAACATCCTCATTCATCGCTTTCAGAACCTG
AAAGGAGTAGCAGTGTCCCTGACAATAGGAGTTTGTGGGATGCAAGCAGCAGAGTAACTCCCCCAGTGGAAGAGAATGTTCTTTGCTGGGAAAGGCATCA
TTTGCGTTTGGATTTTATCTGCCTTGATGGTTGTAAATCAAGGACACCAAATACTTCAACTAAGGTGCAGGGTTCAACATCTTGCCCTATTCTGCTTCTT
ACAAACAGTAACGGAATGGACTCACTGATGCGATGGTCTGTTATACTTCCCTTAAGCTGGGTTAGGGTCTTCTGGATTCCTTTCATCTCCAAAGGAGCAC
ATGCAATAGGTCTGAGAGAAAAGCGATGGATTGCTTGTGAAGTTGGGCTGCCACAATTTCCTTCTGATTTTCCTGATTGTAATGCGCACTTATCTTTTAT
GGTGAACGAAAGGGCTGCCCTTGACCACAAAGTGGAACGACTACCTCCTTCTGTAAGACCTCTGAAAGTTCCCATGCCTTTCCCATGGAATAGTGTCCGT
CTTGCTCTTGATAAAGGATCTGCTATAGTTCAAGATCCTCAAATTTCTGGTCGAAAAGATAACATTGATGACAATTCATTATTGAGCTCAGAAGATGGGG
ATTGTGCAAAAACAGTAGCCACTGGTCATTGTAATTCATTTGATGGATTTGTAGGACGGACATCCAGTATACTGATTGATTTCTTGAGTGAAATCCATGC
CAGTCATTTGCTTTTGTTTCCTCACATTCCAAATAAGAAGACAAGGCTTTCAGAGTTTATAAAGGATGAAAGCATCCTCAGTAAAGGTCAATGTAGTGCC
CACCAAATCACTTCTAACCGTAGATTGTGTTTCATTAGAGTTCTTCTACATGCATACAAGGAAGGTTTTTTTGAAGAAGGAGCAGTTGTTTGCGCTCCTG
GTCCAAATGATTTATCCATGTGGATTTCTAGTTCAGAAAATAATGAAGGTGGACTTCAAATTTCCCAGTCATCTGTGGGTTCATATTTCAAAGAGCTACC
TTCTAGTAAGTGGGAACTCTGGATACCGCAGGGCCCTGTGGTAAGAGAATCTCATAGATGGCCTATTGGTTTTGTCACTGCTGGATTTGTTCGAGGGAGC
AAGAAGCTAGTGGCTGAGGCTTTTTGTGAGGCAGTTTTACTAGCTCAGCTTAGGGAGGAGCAGTGGATTGGGATGCCTGTGAAGCAAAGGAAGAAGGAAA
TATATGTCCTTGTTAGGAACCTGAGATCTTCTGCATATAGACTCGCCCTTGCCACTGTAGTCCTGGAACAAGAAGAAGAAGATGTGGTATTCTTGTGA
AA sequence
>Potri.002G194100.3 pacid=42777057 polypeptide=Potri.002G194100.3.p locus=Potri.002G194100 ID=Potri.002G194100.3.v4.1 annot-version=v4.1
MAVDGSKKSKVSTAPPRKINVQKFAETRASELESLHTIVSNRLNNNFRSQRNKRRRTTAYENQAAKKRHRKRRNLGLLGKANDDLSSASENKEPRKVPRR
VRRRIELKKNPESGFATSGDGTRRLRTHVWHAKRFTMTKLWGFHLPLGLHGRGRGSRALLKWYRDGAVVHDASYHTAVQLKGPEESLISILNMVLVPSPS
AQSRDIAKSILTGVIYGTAMLHHAGAPVSQPIAPVNYMWRPSCLRNRENGNNEHSSGGFNETQISDACSSHRQLWVWIHASAFSEGYDALKFACQKQMNE
SGILINCLSLEGQLAKLEVMGSQASKLLQKTLHPFSCNSDNSWQLRNCSVLEVDGDSELKKSIFQSKNISPCSVLSLAVKDPRSLPVNIADIPKPTPTSV
LNNVPEDEAKEHDALTVNFGNGEKHPHSSLSEPERSSSVPDNRSLWDASSRVTPPVEENVLCWERHHLRLDFICLDGCKSRTPNTSTKVQGSTSCPILLL
TNSNGMDSLMRWSVILPLSWVRVFWIPFISKGAHAIGLREKRWIACEVGLPQFPSDFPDCNAHLSFMVNERAALDHKVERLPPSVRPLKVPMPFPWNSVR
LALDKGSAIVQDPQISGRKDNIDDNSLLSSEDGDCAKTVATGHCNSFDGFVGRTSSILIDFLSEIHASHLLLFPHIPNKKTRLSEFIKDESILSKGQCSA
HQITSNRRLCFIRVLLHAYKEGFFEEGAVVCAPGPNDLSMWISSSENNEGGLQISQSSVGSYFKELPSSKWELWIPQGPVVRESHRWPIGFVTAGFVRGS
KKLVAEAFCEAVLLAQLREEQWIGMPVKQRKKEIYVLVRNLRSSAYRLALATVVLEQEEEDVVFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47300 ribonuclease Ps (.2.3) Potri.002G194100
[exp]
0 1
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.002G144700
[exp]
1.73 0.9065
AT2G30140 UDP-Glycosyltransferase superf... Potri.009G077500
[exp]
2.00 0.8628
AT1G60170 EMB1220 embryo defective 1220, pre-mRN... Potri.014G102800
[exp]
2.44 0.8558
AT5G51140 Pseudouridine synthase family ... Potri.015G101300
[exp]
3.74 0.8546
AT2G19490 recA DNA recombination family ... Potri.006G148700
[exp]
5.91 0.8261
AT4G35290 ATGLUR2, ATGLR3... GLUTAMATE RECEPTOR 3.2, glutam... Potri.009G168300
[exp]
8.00 0.8417 Pt-GLUR2.1
AT3G20740 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDO... Potri.001G417300
[exp]
8.94 0.8239 FIE.1,PGE901
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.014G135200
[exp]
9.48 0.8636 Pt-DEGP2.2
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.001G122800
[exp]
10.19 0.8326
AT5G49580 Chaperone DnaJ-domain superfam... Potri.010G148900
[exp]
10.39 0.8648

Potri.002G194100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.