Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47330 1049 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 442 / 4e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G63120 432 / 3e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 415 / 7e-137 DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 402 / 4e-126 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G14610 339 / 6e-106 DEAD box RNA helicase family protein (.1.2) AT3G01540 337 / 3e-105 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 338 / 1e-101 DEAD box RNA helicase family protein (.1) AT2G33730 328 / 6e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 316 / 1e-97 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038300 [exp] 418 / 5e-138 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G257400 [exp] 427 / 3e-134 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 407 / 2e-132 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 422 / 5e-132 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 405 / 2e-131 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 342 / 2e-105 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 338 / 3e-104 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 345 / 1e-103 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.019G130900 [exp] 320 / 1e-99 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011466 [exp] 1132 / 0 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037527 [exp] 1131 / 0 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 416 / 3e-137 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 415 / 9e-137 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 416 / 1e-135 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 413 / 2e-134 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035327 [exp] 411 / 1e-129 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032135 [exp] 341 / 2e-106 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 338 / 2e-105 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10015187 [exp] 329 / 2e-101 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G194600.1 pacid=42779633 polypeptide=Potri.002G194600.1.p locus=Potri.002G194600 ID=Potri.002G194600.1.v4.1 annot-version=v4.1 ATGTCAAAGCGAAAATTCGGATTCGAAGGGTTTGGCATAAACCGCCAAGCAACGTACAACTTTGAAAGATCCCAAGCTCCGCAAAGGCTCTACGTCCCTC CCTCCTCTCGCCAAAACCACGATAACTACGAGGATACCGACCTTGACAACATCGATTACGACGATAATGATGCCGCCAAGGAGAGTGCAGAAAATAATGG CTCAGCTGCCGAAATTGACCCTCTGGATGCGTTCATGGAGGGAATACACGAGGAGATGAGGGCAGCACCACCGCCGAAGGCTAAGGAGAAGGTGGAGAGG TATAAGGATGATGATGATGAAGAGGATGATCCTATGGAGAGTTTTTTGAGGGCGAAGAAGGATCTAGGGTTGACGCTGGCCGCAGATGCACTTCGTGCTG GTTATGATTCCGATGAGGAGGTTTATGCAGCGGCAAAAGCTGTGGATGCGGGGATGCTGGAGTATGATTCTGATGATAATCCGGTTGTTGTTGATAAAAA GAAGATTGAGCCGATTCAAGCTCTTGACCATGGTTCTATCGAGTATGAGCCTTTTAGCAAGGATTTCTATGAGGAGAGCCCATCGATTTCAGAGATGAGT GAGCAGGATGTTGCGGAATACATGAAGAGTCTGGCTATCCGTGTTTCAGGTTTTGAAGTTCCAAGGCCAATTAAAACATTCGAAGATTGTGGTTTTTCAC CACAACTGATGAATGCTATTGCGAAACAAGGGTATGAAAAGCCTACACCAATACAGTGCCAAGCTCTGCCGATTGTGCTTTCCGGTAGTGATATTATTGG TATGGCTAAGACAGGTTCAGGTAAGACTGCTGCTTTTGTACTTCCTATGATCGTTCATATTATGGATCAGCCTGAACTCGAGAAAGAAGAGGGTCCGATA GGAGTAGTATGTGCGCCTACTAGGGAATTGGCGCATCAGATATATTTGGAGACAAAGAAATTTTCTAAATCGCATGGGATACGGGTCTCTGCTGTGTATG GTGGAATGTCCAAGCTTGATCAGTTCAAAGAACTCAAGGCGGGGTGTGAGATTGTTATCGCTACACCTGGGAGATTAATTGATATGTTAAAGATGAAGGC ATTAAATATGTCGAGAGCAACTTACTTGGTACTTGATGAGGCTGATCGGATGTTTGACCTTGGATTTGAGCCACAAATAAGGTCTATTGTTGGTCAGATT AGACCAGATCGCCAGACTTTACTATTTTCAGCTACAATGCCTCGCAAAATTGAGAAGTTAGCTAGGGAGATCCTCACTGATCCTGTGAGAGTTACAGTGG GGGAGGTTGGAAGGGCCAATGAGGATATTACTCAGGTTGTTCAAGTCATTCCTTCTGATGCGGAGAAGTTGCCTTGGCTTATCGAAAAGCTACCCGGGAT GATTGATGAGGGTGATGTTCTGGTTTTTGCTTCTAAGAAGGCTACTGTAGATGATATTGAGTCACAATTGGCTCAAAAGGCGTTTAAAGTTGCAGCCCTT CATGGTGATAAAGACCAGGCTTCTCGGATGGAAATTTTACAAAAATTTAAATCTGGTGTCTATCATGTTCTTGTTGCAACTGATGTTGCTGCTCGTGGAC TTGACATCAAGTCAATTAAGTCTGTGGTCAACTTCGATATTGCAAGAGAGATGGATGTGCATGTGCATCGCATTGGTAGGACTGGTCGAGCTGGTGATAA AGATGGGATTGCATACACTCTTATAACTCAGAAAGAGGCACGGTTTGCTGGTGAATTGGTTAACAGTTTGATTGCTGCTGGTCAGAATGTCTCTGTGGAA CTTATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATTCCAGAAAAGGAGGTGGGAAAAAGGGTAAAGGGAGGGGTGGAGGCAGTCGAG GTGTACGTGGAGTGGATTTTGGTCTTGGCATTGGTTATAATCCAGAATCCAATAGTACCTCATCTCCTGCTGTTACAAGTCGATCTCCTGCTGTTACAAG TCGATCTACTGCTGTTAATTCGCTGAGGACGGGGGTGATGGCACAATTCAAGAGCAACTTTGTTGCAGCTACATCAAACTCCCAAAGTCCAGGCTTGAAT ACCAGTTCAAGTGTTTATGCTAACAAGAGACCAGCACTGCGAGGATTTGTCTCTGGTGGTTCAATTGGCGGAGATATGAATAGACCTCAGACAACCAGTT CATTGGCTGGATTTGTCTCTGGTGGTTCAATTGGAGAAGATATGGATAGACCTCGGACAACCAGTTCATTGCCTGGATTTGCCTCTGGTGGTTCAATTGG AGGAGATGCAACTCAAACTCGGACAGTCAGTCAGAACTCTGGAGGAAATACAAGTCAGAAGAATACAGAAGGTTCCAGAGATAGAGGGAGAGAAAGGCGG AGGCCCTCTGGTTGGGACCGTTAG
AA sequence Show only first row Show all	>Potri.002G194600.1 pacid=42779633 polypeptide=Potri.002G194600.1.p locus=Potri.002G194600 ID=Potri.002G194600.1.v4.1 annot-version=v4.1 MSKRKFGFEGFGINRQATYNFERSQAPQRLYVPPSSRQNHDNYEDTDLDNIDYDDNDAAKESAENNGSAAEIDPLDAFMEGIHEEMRAAPPPKAKEKVER YKDDDDEEDDPMESFLRAKKDLGLTLAADALRAGYDSDEEVYAAAKAVDAGMLEYDSDDNPVVVDKKKIEPIQALDHGSIEYEPFSKDFYEESPSISEMS EQDVAEYMKSLAIRVSGFEVPRPIKTFEDCGFSPQLMNAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPI GVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQI RPDRQTLLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIEKLPGMIDEGDVLVFASKKATVDDIESQLAQKAFKVAAL HGDKDQASRMEILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEARFAGELVNSLIAAGQNVSVE LMDLAMKDGRFRSKRDSRKGGGKKGKGRGGGSRGVRGVDFGLGIGYNPESNSTSSPAVTSRSPAVTSRSTAVNSLRTGVMAQFKSNFVAATSNSQSPGLN TSSSVYANKRPALRGFVSGGSIGGDMNRPQTTSSLAGFVSGGSIGEDMDRPRTTSSLPGFASGGSIGGDATQTRTVSQNSGGNTSQKNTEGSRDRGRERR RPSGWDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47330			P-loop containing nucleoside t...		Potri.002G194600 [exp]	0	1
AT5G18230			transcription regulator NOT2/N...		Potri.019G032800 [exp]	3.16	0.7307
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	14.14	0.6957
AT1G07510		FTSH10	FTSH protease 10 (.1)		Potri.009G033600 [exp]	16.37	0.7395
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	19.20	0.6864	Pt-CCSPK1.2
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	20.85	0.6790	ACA3.2
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	38.34	0.6085	CDC48.3
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G149400 [exp]	38.88	0.6799
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	44.00	0.6853
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	48.37	0.6853	PRMT901
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.004G069200 [exp]	55.31	0.6536

Compare expression of checked genes

Potri.002G194600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.