Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02010 958 / 0 Protein kinase superfamily protein (.1) AT2G20300 381 / 2e-121 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 376 / 3e-116 Protein kinase superfamily protein (.1) AT3G58690 326 / 1e-104 Protein kinase superfamily protein (.1) AT1G20650 318 / 4e-102 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 315 / 1e-100 Protein kinase superfamily protein (.1) AT5G13160 317 / 2e-100 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 310 / 1e-98 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G68690 318 / 5e-98 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G18610 312 / 7e-98 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119100 [exp] 1189 / 0 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 397 / 1e-124 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 390 / 1e-124 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 390 / 1e-124 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 371 / 2e-116 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 372 / 2e-114 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 327 / 2e-104 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 325 / 2e-104 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 325 / 1e-103 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011466 [exp] 933 / 0 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037526 [exp] 634 / 0 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 383 / 4e-122 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10027635 [exp] 394 / 8e-122 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10022848 [exp] 379 / 7e-121 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10011933 [exp] 385 / 5e-118 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 328 / 7e-105 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040050 [exp] 321 / 6e-103 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 324 / 1e-102 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 324 / 2e-102 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G194700.1 pacid=42777117 polypeptide=Potri.002G194700.1.p locus=Potri.002G194700 ID=Potri.002G194700.1.v4.1 annot-version=v4.1 ATGTCGGTGCTTGCAATTTCAAGCCGCGGCGGATTATCGAGAAGAGTCTGGTATTTGTTTCTGCAGCTTTTGATCATTTTATGCTATTTAATTCCCATCA CCAATGCCGATTTAGCTGATGATCAATTCAGAGGGCCGATCTTATCTCCATCTAGTGTGCCTCTGGTTGCACCTGCCATTCCTGATCTACCCCTCCCATA CAATCTACCATCGTTACATAAACCACGGAAAAAGCATTTCTCACCTCATGGTGCACCGGCATTTGTGGTAGCACCAACCCAACCTCCTAATTATGGTCCA CTGATAACTTCCGGCCATCCCCCGACTAGTTCACACTTGTCTAAACCATCAATGAAGAAGAATGCATTGGTGCCTCCCAGTGTTGGATTGGTAGATGTTG CTCCAACTCAGTCTGGTGATGGCACAAATCCTACTGTTTTAGCTCAGTCCCCATTATCTCCTTCTTTTTCTGATTGTTGTAAACCAGACATGGTGCTGAA ACGAGGGAGTCATGGTTGCCACTGTGTGTATCCAATAAAGCTTGACCTTCTCCTTTTGAATGTCTCACAAAATCCTAATTGGAACCTGTTTCTAGAAGAA TTATCTTCCCAGCTGGGCTTGCTAGTTTCACAAATTGAGCTGATAAACTTTTATTTACTAAGCTTATCAAGATTAAATATTTCAATGGATATCATTCCTC ACACAGGAATCAGTTTCTCTGCCAGTGATGCATCTGCAGTAAACTCTTCGCTTGCCTTGCATAAGGTTCACTTTGACTCCTCTCATGTGGGTGATTATAA ACTCCTGAATCTTACTTGGTTTGAACCTCCTGCACCTTCGCCAGCTCCTATTGTTGCTTCATCGCCCATGAGGGCACCGGCACATCAATCTTCAACTTCA ACATCAACATCGGTTGGTTCTTCAAGGAAGGACAAACATACAAATTTGATTCTTGTTCTGGGTATTGGTTCTGGCATTGTGATTATTGCCATTGTATCTA TGCTAATTATCTGTTCGTGTGTATTCCGTGAAGGGAAGCCTAAAGCATCCCCTAAAGAAACTGTAAAGCCAAGGACCATAGATCCAGTTCCAGCAGCAGG TTCTCTTCCACATCCTTCAAGTACACGGTTTCTAGCCTATGAAGAACTTAAAGAAGCAACAAACAACTTTGAATCTGCAAGCATACTTGGAGAGGGTGGG TTTGGTAGAGTTTACAAAGGTGTCTTAAGTGATGGCACAGCTGTAGCAATTAAGAGGCTTACTAGTGGAGGGCAACAAGGGGGTAAAGAATTTTTGGTGG AGGTTGAGATGCTTAGCAGGCTGCATCACCGTAATCTTGTCAAACTTGTGGGCTACTATAGCAGTCGTGACTCTTCACAAAACCTACTTTGCTATGAGCT TGTTCCAAATGGAAGTCTAGAGGCCTGGCTCCATGGCCCTCTGGGTGCAAACTGTCGTCTGGATTGGGATACCAGAATGAAGATTGCACTTGATGCTGCA AGAGGACTTGCGTACCTACACGAGGACTCTCAACCCTGTGTCATCCACAGAGATTTCAAGGCATCCAATATATTGCTTGAGAAGAACTTTCATGCGAAAG TTTCTGATTTTGGTCTTGCCAAACAGGCACCTGAAGGCAGAGCAAATTATCTTTCCACTCGGGTCATGGGAACATTTGGGTATGTAGCCCCTGAGTATGC TATGACCGGACATCTACTAGTCAAAAGTGATGTTTATAGCTATGGAGTTGTCCTCCTCGAGTTGCTGACTGGAAGGATGCCTGTAGATATGTCACAACCA TCCGGCCAAGAGAACCTTGTCACTTGGGCCAGGCCCATTCTGAGAGACAAGGACCAGTTAGAAGAGCTCGCTGATCCAACGCTTGGAGGGAAATATCCCA AGGAAGATTTTGTACGAGTCTGCACAATTGCAGCAGCGTGTGTTTCCTCTGAGGCAAGCCAGCGACCGACCATGGGTGAAGTAGTACAGTCACTTAAAAT GGTGCAGCGTGTAATGGAATATCAAGATTCCATGTCAACCTCCAATGCCCGGGCCAACCTGAGGCAGTCATCTAATACCTTCGAATCTGATGGGACATCT TCAATGTTCTCTTCTGGTCCATACTCTAGCCTAAGTGCCTTAGATAACGACAATATCTCTCGGACAGCAGTTTTCTCTGAAGACCTTCATGAAGGACGAT GA
AA sequence Show only first row Show all	>Potri.002G194700.1 pacid=42777117 polypeptide=Potri.002G194700.1.p locus=Potri.002G194700 ID=Potri.002G194700.1.v4.1 annot-version=v4.1 MSVLAISSRGGLSRRVWYLFLQLLIILCYLIPITNADLADDQFRGPILSPSSVPLVAPAIPDLPLPYNLPSLHKPRKKHFSPHGAPAFVVAPTQPPNYGP LITSGHPPTSSHLSKPSMKKNALVPPSVGLVDVAPTQSGDGTNPTVLAQSPLSPSFSDCCKPDMVLKRGSHGCHCVYPIKLDLLLLNVSQNPNWNLFLEE LSSQLGLLVSQIELINFYLLSLSRLNISMDIIPHTGISFSASDASAVNSSLALHKVHFDSSHVGDYKLLNLTWFEPPAPSPAPIVASSPMRAPAHQSSTS TSTSVGSSRKDKHTNLILVLGIGSGIVIIAIVSMLIICSCVFREGKPKASPKETVKPRTIDPVPAAGSLPHPSSTRFLAYEELKEATNNFESASILGEGG FGRVYKGVLSDGTAVAIKRLTSGGQQGGKEFLVEVEMLSRLHHRNLVKLVGYYSSRDSSQNLLCYELVPNGSLEAWLHGPLGANCRLDWDTRMKIALDAA RGLAYLHEDSQPCVIHRDFKASNILLEKNFHAKVSDFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRMPVDMSQP SGQENLVTWARPILRDKDQLEELADPTLGGKYPKEDFVRVCTIAAACVSSEASQRPTMGEVVQSLKMVQRVMEYQDSMSTSNARANLRQSSNTFESDGTS SMFSSGPYSSLSALDNDNISRTAVFSEDLHEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	0	1
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	2.82	0.9285
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	2.82	0.9428
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.003G057800 [exp]	3.60	0.9138
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	3.87	0.9285
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	4.47	0.9213
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	5.29	0.9199
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	5.47	0.9201
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	5.47	0.9148
AT3G13480			unknown protein		Potri.001G003300 [exp]	5.65	0.9179
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	7.21	0.9225	SKU5.2

Compare expression of checked genes

Potri.002G194700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.