Plant FIBer expression Database

Potri.002G195132 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G56460 243 / 9e-77 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
AT2G47350 231 / 3e-72 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
AT3G06660 191 / 2e-57 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G119600
[exp]
443 / 4e-154 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.013G008300
[exp]
305 / 8e-100 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.005G014000
[exp]
294 / 5e-96 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Potri.008G106200
[exp]
210 / 9e-65 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Potri.010G144000
[exp]
46 / 6e-06 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031419
[exp]
283 / 2e-91 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Lus10010914
[exp]
280 / 1e-90 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Lus10016899
[exp]
217 / 3e-67 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Lus10037760
[exp]
210 / 1e-64 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0175 TRASH PF04438 zf-HIT HIT zinc finger
CL0175 PF04795 PAPA-1 PAPA-1-like conserved region
Representative CDS sequence
>Potri.002G195132.1 pacid=42779758 polypeptide=Potri.002G195132.1.p locus=Potri.002G195132 ID=Potri.002G195132.1.v4.1 annot-version=v4.1
ATGGGGACTAGCAAAAATACTGCTGGGAAAGAAGGTGATAAGCCTGAACCAGTTCGTAAGAGCAAGCGGGCCCCCAAGAGGCGTGTGCTGGATGGTGATG
ATGATGAGGATGATGAGATTCGGTACCTAGAGAAACTCAAGTCAAAAGTCCCAACAAGACATAAGGAAGATGATGGCAATGATGATGATGAATCAAGTAA
GAAGCAACAGAAACTTTCTACCTTGGAAAACAATAGTGCTTCAAGGCTGGTTAAAGATGGGAAGAAAATATCCAGATCAGACCGAGCATCAGAGGACGAA
GATAATGAGGAAGAAGAATCATTATCTAATTGTGATTTCGAAGGTAGTAAGAAGAAGCAGAAAAGGGAATCTATTGAGTCATTGACAGATGGTAAGAGGG
AGATGACTTTAACCAAGCGTCAACAGGCTCTTCAGTCAAGCAAAGATGGCTCTTCTGTTCCTGATACTAACTTAATTGAGTTTCCAAATGGATTACCACC
TGCACCATCAAAAAAGCAAAAGGAGAAACTTACAGAAGTCGAGCAGCAATTAAAGAAAGCTGAGGCAGCTCAGAGGCGGAGATTGCAAGTTGAGAAGGCT
GCGAGGGAATCTGAGGCTGAGGCTATAAGAAAAATTCTTGGTCAAGATTCCAGCCGGAAAAAGCGAGAAGAGAAAATGAAGAAGCGTCTGGAAGAAATGG
CACAGGAGAAGGCTGTCAACGCCCAGATGTCGAGCACCATCAGATGGGTCATGGGTCCTACAGGGACTGTTGTGACATTTCCCAAGGATATGGGTCTCCC
TAGTATTTTCGACTCTAAACCCTACAGCTATCCTCCCCCAAGAGAGGTGTGCGCAGGCCCTTCTTGTACTAACCCGTACAAGTATCGAGATTCCAAGTCA
AAGCTCCCGCTTTGCAGTCTACAGTGCTACAAGGCAATGGAGCAAGAGGCATCCTAA
AA sequence
>Potri.002G195132.1 pacid=42779758 polypeptide=Potri.002G195132.1.p locus=Potri.002G195132 ID=Potri.002G195132.1.v4.1 annot-version=v4.1
MGTSKNTAGKEGDKPEPVRKSKRAPKRRVLDGDDDEDDEIRYLEKLKSKVPTRHKEDDGNDDDESSKKQQKLSTLENNSASRLVKDGKKISRSDRASEDE
DNEEEESLSNCDFEGSKKKQKRESIESLTDGKREMTLTKRQQALQSSKDGSSVPDTNLIEFPNGLPPAPSKKQKEKLTEVEQQLKKAEAAQRRRLQVEKA
ARESEAEAIRKILGQDSSRKKREEKMKKRLEEMAQEKAVNAQMSSTIRWVMGPTGTVVTFPKDMGLPSIFDSKPYSYPPPREVCAGPSCTNPYKYRDSKS
KLPLCSLQCYKAMEQEAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G56460 HIT zinc finger ;PAPA-1-like c... Potri.002G195132
[exp]
0 1
AT5G15640 Mitochondrial substrate carrie... Potri.004G117000
[exp]
6.00 0.6907
AT5G66210 CPK28 calcium-dependent protein kina... Potri.007G057600
[exp]
6.00 0.6782 CPK16,Pt-CPK16.1
AT1G15240 Phox-associated domain;Phox-li... Potri.001G183100
[exp]
10.67 0.7008
AT1G68580 agenet domain-containing prote... Potri.008G119400
[exp]
15.00 0.6634
AT5G40100 Disease resistance protein (TI... Potri.006G283700
[exp]
15.55 0.6709
AT4G36210 Protein of unknown function (D... Potri.007G016100
[exp]
15.65 0.6189
AT5G07740 actin binding (.1) Potri.015G061001
[exp]
17.74 0.6938
AT1G08370 DCP1, ATDCP1 decapping 1 (.1) Potri.006G208600
[exp]
26.17 0.5752
AT4G27220 NB-ARC domain-containing disea... Potri.001G406000
[exp]
27.49 0.6893
AT4G27220 NB-ARC domain-containing disea... Potri.018G145562
[exp]
30.16 0.6779

Potri.002G195132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.