Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34830 120 / 2e-31 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 117 / 1e-30 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT1G29280 114 / 2e-30 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT4G01250 113 / 5e-30 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT3G58710 112 / 1e-29 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT5G45050 107 / 2e-26 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G52830 103 / 5e-26 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT2G30590 97 / 2e-23 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT2G23320 96 / 2e-23 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G23550 96 / 2e-23 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119800 [exp] 312 / 5e-108 AT3G58710 124 / 7e-34 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) Potri.001G460600 [exp] 119 / 3e-31 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G157100 [exp] 119 / 7e-31 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 115 / 8e-31 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 113 / 3e-30 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1) Potri.002G164400 [exp] 111 / 9e-29 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.014G090300 [exp] 110 / 1e-28 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.003G132700 [exp] 107 / 3e-27 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.001G099001 [exp] 106 / 4e-27 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038426 [exp] 120 / 2e-32 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10007305 [exp] 115 / 1e-31 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 114 / 1e-30 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10036399 [exp] 112 / 7e-30 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10007907 [exp] 111 / 2e-28 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10005428 [exp] 108 / 3e-28 AT1G29280 194 / 1e-61 WRKY DNA-binding protein 65 (.1) Lus10015229 [exp] 105 / 6e-27 AT1G29280 197 / 1e-62 WRKY DNA-binding protein 65 (.1) Lus10039295 [exp] 102 / 2e-25 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 102 / 4e-25 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10032303 [exp] 100 / 8e-25 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G195300.2 pacid=42778167 polypeptide=Potri.002G195300.2.p locus=Potri.002G195300 ID=Potri.002G195300.2.v4.1 annot-version=v4.1 ATGGATGGTTCTCCATCTAGAAAATTGGACTCTAATGTTTCAGAGCACACCCAAGAAATTCAGACATCCAAAAGAAGGAAGGTGGTTGAGAAGACTGTTG TTAGAGTGAGGATTGGAAAAAATGCTGGGAAATTAAAGAATGAAGGGCCACCTTCTGATTTCTGGTCTTGGAGGAAATATGGGCAAAAGCCTATTAAAGG ATCTCCTCATCCAAGGGGCTATTACAGGTGCAGTACATCAAAGGGCTGTTCAGCTAAGAAACAAGTGGAGAGATGCAGGACAGATGCTTCAGTACTCATC ATTACTTACACCTCAAATCACAACCATCCAGGTCCGGATCTCCACGAATCCAGCCTGAACCAACAGTCAAAAGATCCCGAAACCCCTCCGACTGATCATG TAGATCATCCCACAACTCCCAAACAAGAAAAGCCAGAAGAAGAAACAGAAGAAGGGCATGGCCACCCCATTGTGCCAAGCGCTGATGAAAATGCCAGTGA AGGTAACAGTTTTCACTACTTACAATCCCCAATAAGAATTTCTCAAGATATCATGATCAGCCAAGAAGATCCTTTCGCTGAGAACCCAGAGAAAAGTCAT GATACATTGGGTATTGTCTTGGATGAGGAGCCCATCAGTTGCTCCAGACTGATGACATTTTCAGCACCCAAATCAGAAGAGAACAACGACTTCTTTGATG AACTAGAAGAGCTACCCCACATCTTCGTCTTTCACTAG
AA sequence Show only first row Show all	>Potri.002G195300.2 pacid=42778167 polypeptide=Potri.002G195300.2.p locus=Potri.002G195300 ID=Potri.002G195300.2.v4.1 annot-version=v4.1 MDGSPSRKLDSNVSEHTQEIQTSKRRKVVEKTVVRVRIGKNAGKLKNEGPPSDFWSWRKYGQKPIKGSPHPRGYYRCSTSKGCSAKKQVERCRTDASVLI ITYTSNHNHPGPDLHESSLNQQSKDPETPPTDHVDHPTTPKQEKPEEETEEGHGHPIVPSADENASEGNSFHYLQSPIRISQDIMISQEDPFAENPEKSH DTLGIVLDEEPISCSRLMTFSAPKSEENNDFFDELEELPHIFVFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Potri.002G195300 [exp]	0	1
AT4G27250			NAD(P)-binding Rossmann-fold s...		Potri.001G415500 [exp]	5.74	0.6437
					Potri.003G196200 [exp]	6.16	0.6749
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.001G183000 [exp]	15.68	0.6169
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	19.23	0.6331
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	30.44	0.6050
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	31.36	0.6346
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	38.53	0.6004
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.003G212300 [exp]	39.64	0.5975
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	43.95	0.6155
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	46.90	0.6021

Compare expression of checked genes

Potri.002G195300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.