Plant FIBer expression Database

Potri.002G195400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47360 162 / 3e-48 unknown protein
AT1G02570 151 / 4e-44 unknown protein
AT1G02575 126 / 1e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G119900
[exp]
381 / 3e-134 AT2G47360 204 / 1e-64 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025023
[exp]
132 / 1e-36 AT1G02570 116 / 1e-30 unknown protein
Lus10010004
[exp]
96 / 3e-23 AT1G02570 96 / 2e-23 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G195400.1 pacid=42778859 polypeptide=Potri.002G195400.1.p locus=Potri.002G195400 ID=Potri.002G195400.1.v4.1 annot-version=v4.1
ATGGGGTGGCAAAAGAAGGAAAAAAAGCTCTCAGGTTGTGCCATCTTCAGAGAACCCTTCCATGTCGTGACCATTACCCTCCTCAGTCTCTTGCTGCCTC
TCTCATTTCTCCTCCTTGCCAGGCTCTCTAGTTATAACTATATGTTGACCATCACATCTGATCCTACACAGCAATCACCCTCTTCTTTCATCTTATCCTT
ATTGTTGTCCATCAATCCATCAATTCTGTGTTTTCTTGTTTCAATTGTTAGCATAGCTACTCTTATTCACGGCTTGGCAGGAAGAACTACCCTTCTAAGC
GAGTCACCAGGCGTAATTTACCGGCCCGGATTGTACACCGCATGGATTGTGTTATGCACTTTACAGATTTGTGTTGGCTTGGGCATTGAAGGGAGCATAG
CTGCTGGAATATTTGATGGTTCTGGTTTTGATACTCGAAGAGGTTTATTGTGTAGATACATATTTTTCTTGGGGTTGCATGAGACCATGATCCACTGGTC
AAGAACTGTTGTTAAGCCAGTGGTTGATGACACAATTTTTGGTGCTGCTGGAGATGAGAAGTGGGCACAGAGGGTGACCATAGCTTTGAGTTATGGTACT
TTGTGGTGGTTGAGTATAAGGGATGAAGTTGAGTCTCTGGTTTTCGTAGCAGAGGCAAAGATAGAGCTGTCGATGGATTTAGGAGTGGCTGACTTGGTTG
GTTGGTGGCTGTATTACCTGACAGTGACGATCGGAATGGTAAGAGTTGTCAAGAGTCTTATCTGGATTGGGGCGATTCTGCTATGTAAGAGGGTACGACG
GAATTCTACGGAGACCTGTGAGGATGAATTTGACAAGGTCTGA
AA sequence
>Potri.002G195400.1 pacid=42778859 polypeptide=Potri.002G195400.1.p locus=Potri.002G195400 ID=Potri.002G195400.1.v4.1 annot-version=v4.1
MGWQKKEKKLSGCAIFREPFHVVTITLLSLLLPLSFLLLARLSSYNYMLTITSDPTQQSPSSFILSLLLSINPSILCFLVSIVSIATLIHGLAGRTTLLS
ESPGVIYRPGLYTAWIVLCTLQICVGLGIEGSIAAGIFDGSGFDTRRGLLCRYIFFLGLHETMIHWSRTVVKPVVDDTIFGAAGDEKWAQRVTIALSYGT
LWWLSIRDEVESLVFVAEAKIELSMDLGVADLVGWWLYYLTVTIGMVRVVKSLIWIGAILLCKRVRRNSTETCEDEFDKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47360 unknown protein Potri.002G195400
[exp]
0 1
AT1G32100 ATPRR1 pinoresinol reductase 1 (.1) Potri.003G100200
[exp]
4.89 0.8534 PCBERp8
AT3G51000 alpha/beta-Hydrolases superfam... Potri.004G039700
[exp]
5.83 0.8179
AT3G28050 nodulin MtN21 /EamA-like trans... Potri.003G192900
[exp]
7.74 0.8586
AT5G26780 SHM2 serine hydroxymethyltransferas... Potri.002G109200
[exp]
8.77 0.8833 SHMT3
AT1G01630 Sec14p-like phosphatidylinosit... Potri.003G162100
[exp]
9.21 0.8549
AT1G09930 ATOPT2 oligopeptide transporter 2 (.1... Potri.002G109300
[exp]
13.85 0.8182 OPT2.1
AT4G10050 esterase/lipase/thioesterase f... Potri.019G072900
[exp]
14.49 0.7682
AT5G45290 RING/U-box superfamily protein... Potri.001G127100
[exp]
15.68 0.8608
AT2G46225 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) Potri.014G092300
[exp]
15.90 0.8311
AT2G34410 RWA3 REDUCED WALL ACETYLATION 3, O-... Potri.001G352300
[exp]
19.44 0.8624

Potri.002G195400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.