Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62390 594 / 0 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 407 / 4e-136 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G20590 394 / 3e-132 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 392 / 5e-130 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G60790 386 / 3e-128 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G49340 352 / 2e-116 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G06080 340 / 2e-111 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 332 / 2e-108 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT1G48880 310 / 3e-100 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT5G06230 291 / 6e-94 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G071500 [exp] 422 / 5e-143 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 410 / 2e-138 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 392 / 2e-129 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 390 / 7e-129 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 379 / 3e-125 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 370 / 4e-122 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 354 / 8e-117 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 353 / 1e-116 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G203900 [exp] 334 / 2e-109 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002430 [exp] 584 / 0 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10021066 [exp] 403 / 8e-134 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 394 / 3e-131 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 388 / 3e-130 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 380 / 6e-127 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10029126 [exp] 346 / 5e-113 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 330 / 2e-107 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10034039 [exp] 328 / 6e-107 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 326 / 5e-106 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 319 / 2e-103 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.002G195800.1 pacid=42776831 polypeptide=Potri.002G195800.1.p locus=Potri.002G195800 ID=Potri.002G195800.1.v4.1 annot-version=v4.1 ATGGACAGGCAGAGAAGTTTCTCCTTCAAATCCACAAGATCCTTGGTATTTTCTTTCACAATCTCTTCTTTATTCTTTCTCGTATTTTTTACCATCTGGG TGTCCAAATCTACCCCTTCAATTCTCCAAGAAACAAACTTTGAGCTCAACAAAACCTCCCTTGTAGCGAGTTTAAAACCACTTAGTGTACAGCCCTTCAG TGACTTGACTATAAATTCCTCATCATCTGACGTGAAAAGTTCAATTTTTGTAGATACCCATTTTAGAGAACCTGAAAATATTTCTGGATTTGCTAGCATT TCAGTTATTAAAAGAAAGGGCAACGAATCTGAAACTAGTGAGAAAGACAGAGATGGTGTAAATGGTAGTTTTAGCACGGTACAAGAGATTGCGCTGGTAC CAGAAACTGCGAGTGTTGAAGAGAAGAAGAGTAGATCAATTTCAACGCAGAGAATTGAAGTTCAGAGTAGTGAGAATATTGCAGAAGAGACTAGAGGAGC TGCTTCACAGGAAAAAAATGAAGCTCCAAACAAGGAGGGGATTCGAAAGAAGAAAAAAGGACCAATTTCAGTGGCAAATATTAAGACTTCGAGGAATGAA AGAAACAAAGAAAAGAGCATGAGAGAGTGTGATGTTACAAAAGGGAGGTGGATCTATGATGAGAACTATCCTCTCTACACAAATAGTTCATGTCCTTTCA TAGACGAGGGCTTTGATTGTGTTGGCAATGGGAGATTGGATAAAGATTACATGAAATGGAGATGGCAACCTCAAGACTGCAACATCTCAAGATTCAATGC GACAAAAATGCTGGATTTGATTAGAGGGAAGAGGCTAGTTTTTGTCGGCGATTCAATTAACAGGAACCAATGGGAATCCATGCTGTGCATGCTAATGGGA GCTGTTAAAGATCCTAAGAAGGTGTATGAGACCCATGGAAGGAGAATCACCAAGGAGAAAGGGAATTATAGCTTCAAATTTGTGGACTATAAATGTACAG TTGAGTACTATGTGTCACATTTCTTGGTTCATGAGAGTAAAGCAAGGATAGGGTCCAGGAGAGTGCAGACATTACGAATCGATGCCATTGATCATGGTTC ATCAAGATGGAGAGGAGCTGACATTTTGATTTTTAACACTGCACATTGGTGGTCTCACTTCAAAACAAAAGCTGGGATCAACTACTACCAGGAAGGTAAC CAAGTTCATCCCCAGCTTGATGTTTCTATAGCTTTCAGAAGAGCTCTAATGACCTGGGCATCATGGGTTGATAGGCACATTAATCCGAGAAAGACTCGTG TTTTCTTTCGAAGCTCGGCGCCTTCTCATTTCAGGGGCGGACAATGGAATTCAGGTGGGCAGTGTATGGGTGCTACTCAACCCCTTAATGAAACTTCAAG TACGGGCTATTCTGAGAAGAATTCCATTGTTGAAGAGACCATCAAGCACATGAAAACTCCTGTAACTTTCTTGAATATAACTGGCTTCTCGGGCTTTAGG ACAGATGGTCATCCATCTATATATGGAAAAAGACCTGGTAAGCGCTATGCATCGAGCATCCAAGATTGCAGCCATTGGTGTCTTCCAGGTGTTCCAGATA CATGGAACGAGTTTTTGTCCTCTCACTTGCTATCTAAAATAGGCTCTAAACAAGGGGATACGTTTCAGTAG
AA sequence Show only first row Show all	>Potri.002G195800.1 pacid=42776831 polypeptide=Potri.002G195800.1.p locus=Potri.002G195800 ID=Potri.002G195800.1.v4.1 annot-version=v4.1 MDRQRSFSFKSTRSLVFSFTISSLFFLVFFTIWVSKSTPSILQETNFELNKTSLVASLKPLSVQPFSDLTINSSSSDVKSSIFVDTHFREPENISGFASI SVIKRKGNESETSEKDRDGVNGSFSTVQEIALVPETASVEEKKSRSISTQRIEVQSSENIAEETRGAASQEKNEAPNKEGIRKKKKGPISVANIKTSRNE RNKEKSMRECDVTKGRWIYDENYPLYTNSSCPFIDEGFDCVGNGRLDKDYMKWRWQPQDCNISRFNATKMLDLIRGKRLVFVGDSINRNQWESMLCMLMG AVKDPKKVYETHGRRITKEKGNYSFKFVDYKCTVEYYVSHFLVHESKARIGSRRVQTLRIDAIDHGSSRWRGADILIFNTAHWWSHFKTKAGINYYQEGN QVHPQLDVSIAFRRALMTWASWVDRHINPRKTRVFFRSSAPSHFRGGQWNSGGQCMGATQPLNETSSTGYSEKNSIVEETIKHMKTPVTFLNITGFSGFR TDGHPSIYGKRPGKRYASSIQDCSHWCLPGVPDTWNEFLSSHLLSKIGSKQGDTFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	3.60	0.8157
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.014G101500 [exp]	3.87	0.7900
AT1G25240			ENTH/VHS/GAT family protein (....		Potri.008G140100 [exp]	9.16	0.7150
AT1G10850			Leucine-rich repeat protein ki...		Potri.010G097200 [exp]	11.66	0.7778
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	12.04	0.7246
AT2G35470			unknown protein		Potri.003G095500 [exp]	12.04	0.7826
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	12.36	0.7776
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	14.00	0.7778
AT2G04280			unknown protein		Potri.014G170200 [exp]	14.56	0.7878
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	15.42	0.7541

Compare expression of checked genes

Potri.002G195800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.