Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47390 1393 / 0 Prolyl oligopeptidase family protein (.1) AT4G14570 57 / 8e-08 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G36210 44 / 0.0009 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120600 [exp] 1633 / 0 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.015G013400 [exp] 60 / 8e-09 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1) Potri.012G014900 [exp] 56 / 2e-07 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1) Potri.008G160400 [exp] 55 / 3e-07 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010007 [exp] 1419 / 0 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10025027 [exp] 1294 / 0 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10025026 [exp] 1271 / 0 AT2G47390 1339 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10039405 [exp] 57 / 5e-08 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10022408 [exp] 52 / 2e-06 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10015363 [exp] 50 / 7e-06 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10018107 [exp] 48 / 4e-05 AT5G24260 1031 / 0.0 prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Potri.002G196000.4 pacid=42777334 polypeptide=Potri.002G196000.4.p locus=Potri.002G196000 ID=Potri.002G196000.4.v4.1 annot-version=v4.1 ATGATGCGGCTTCCCAAAGTCAATCATCGTCTGAGTTTCCTGTCTCTCCCCCCGTTCTCTCTTCCCTCACTCACAACATCCGTACGAACTCATGGCCACC TGAGAACTCATCACTCTAAAAGGTTCAAGTCAATTTCAACTATGCCTTGTAGACTCGGCAATCTTGTGCCTCTAAACTCTATTGCAGCCGAAAATGTTGG CAGTCGCTCCAATGCCTCTGTTTCATCCACATCCACCACCGAAGAGGAAGAAGCATTGGCATGTAAATATCAGCTTCCTCCACCGGAGATAAAAGACATT GTTGATGCTCCGCCTCTCCCTGCGTTGTCATTATCACCGCAAAAGGATAAAATACTTTTTCTCAAGCGGAGATCATTACCTCCACTTGCAGAACTAGCAA GACCAGAGGAGAAGCTGGCTGGTTTGCGTATTGATGGGAAATGTAATACTAAGAGCCGGATGTCATTCTACACTGGTATTGGCATTCATCAGTTAATGCC CGATGGTACACTAGGGCCTGAAAAGGAGGTACATGGATATCCTGATGGTGCTAAGATCAACTTTGTCACCTGGTCTCTTGATGGAAGGCATTTGGCCTTC AGCATCCGAGTTTTCGAGGAGGACAATAGCAGCAGTAAACTTAGAGTATGGGTTGCTAATATGGAAACAGGGCAAGCTCGACCTTTGTTTCAGTCACCAG ATGTTTACCTAAATGCTGTTTTTGATAATTTCGTATGGGTGGATAACTCTTCTCTGTTGGTCTGCACCATTCCATCATCTCGTGGAGATCCACCAAAGAA ACCATCGGTGCCCTCTGGTCCAAAGATTCAATCTAATGAGCAGAAAAATGTCGTTCAAGTTAGAACATTTCAGGACTTATTGAAGGATGAGTATGATGAA GACTTGTTTGACTACTACACGACCTCTCAAATTGTGCTGGCTTCTTTGGATGGGACAGCGAAGGAAGTTGGACCTCCAGCTGTATATACATCAATGGATC CATCCCCTGACCAAAAGTACCTTTTAATTAGTTCTATTCACAGACCATACTCTTTTATTGTACCGCGTGGAAGATTTCCCAAAAAGGTAGAAGTATGGAC AACTGATGGGAAATTTGTGAGGGAACTCTGTGATTTGCCTCTAGCCGAGGACATTCCCATTGCAACCAGCAGTGTGCGCAAGGGGAAGCGCGCCATCAAT TGGAGAGCAGACAAGCCTTCAACACTCTACTGGGCAGAGACACAAGATGGAGGTGATGCAAAAGTTGAAGTTTCTCCAAGAGATATAGTTTATACACAGC CAGCTGAGCCATTGGAAGGTGAACAGCCAGAAATCTTGCACAAACTTGATCTTCGCTATGGTGGGATTTATTGGTGTGATGATTCACTAGCACTAGTTTA TGAATCATGGTACAAGACAAGGCGAACAAGAACCTGGGTTATATCTCCTGGTTCAAAAGATGCGAGTCCAAGAATACTATTTGATCGGTCATCAGAAGAT GTGTACTCCGATCCTGGCTCTCCCATGTTGAGGAGGACTCCTGCTGGAACTTACGTGATTGCAAAGATAAAGAAGGAAAATGATGAAGGCACTTATGTTT TACTGAAGGGAAGTGGTGCTACGCCTGAAGGGAACATCCCCTTCCTTGATCTGTTTGACATAAATACAGGCAGCAAAGAACGAATCTGGGAGAGTGACAA GGAAAGGTATTATGAAACTGTTGTTGCTCTTATGTTGGATTACGAAGAAGGGGATTTACTCCTTGATCGGTTGCAAATATTGACCTCCAAGGAGTCAAAG ACAGAAAATAGGCAATATTTCATTCAGAAATGGCCAGAGAAGAAAGCATGTCAGATTACAAATTTTCCACACCCGTACCCACAGTTGGCATCATTGCAGA AAGAGATGATCAGGTACCAGAGAAAAGATGGGGTTCAGCTCACTGCAACATTGTACCTGCCACCAGGCTATGATTTGTCAAAAGATGGCCCTCTTCCATG TCTGGTCTGGTCTTACCCTGGAGAATTTAAAAGTAAAGATGCTGCAGGACAAGTTCGTGGTTCTCCTAATAAATTTGCGGGCATAGGTTCAACATCAGCT CTTCTTTGGTTGGCTAGGAGGTTTGCTATTTTATCTGGACCAACAATCCCTATTATTGGTGAGGGTGATGAGGAGGCGAATGACAGATATGTAGAGCAAC TGGTTGCAAGTGTGGAGGCAGCTGTTGAGGAAGTTATCCAGCGCGGAGTTGCTCATCCCAACAAAATTGCTGTTGGAGGACATTCCTATGGTGCATTCAT GACTGCAAACCTCTTGGCACATGCCCCCCATCTTTTCTGTTGTGGAATTGCTCGCTCTGGAGCTTACAACAGAACACTTACACCTTTTGGCTTTCAGCAC GAGGACAGAACTCTTTGGGAGGCCAGTACTACTTATGTTGAAATGAGTCCTTTCATGTCAGCAAATAAAATTAAAAAGCCAATACTGCTTATCCATGGAG AAGAAGACAATAATTCAGGAACGCTAAACATGCAGTCAGATCGTTTCTTTAATGCTCTGAAAGGTCATGGTGCCCTTTGTCGCCTGGTCATTCTACCCTT TGAGAGCCATGGGTACGCTGCACGAGAGAGCATCATGCATGTTCTATGGGAAACTGATAGATGGCTTCAGAAACATTGTGTGCAGAACCCTACTGATGCA AGTGCAGAACTTGATGCCTGTAAGGACGAGGTGAGCAATGGAGTTAGAGACTCTGATAACCAAGCAGTTGTTGCCAGTGGAGGAGGTGGGCCAGAGTTGG CAGACTTTGAGCATGAAGGGTTCTACTCTTTGCCGAGGTAA
AA sequence Show only first row Show all	>Potri.002G196000.4 pacid=42777334 polypeptide=Potri.002G196000.4.p locus=Potri.002G196000 ID=Potri.002G196000.4.v4.1 annot-version=v4.1 MMRLPKVNHRLSFLSLPPFSLPSLTTSVRTHGHLRTHHSKRFKSISTMPCRLGNLVPLNSIAAENVGSRSNASVSSTSTTEEEEALACKYQLPPPEIKDI VDAPPLPALSLSPQKDKILFLKRRSLPPLAELARPEEKLAGLRIDGKCNTKSRMSFYTGIGIHQLMPDGTLGPEKEVHGYPDGAKINFVTWSLDGRHLAF SIRVFEEDNSSSKLRVWVANMETGQARPLFQSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPSGPKIQSNEQKNVVQVRTFQDLLKDEYDE DLFDYYTTSQIVLASLDGTAKEVGPPAVYTSMDPSPDQKYLLISSIHRPYSFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSVRKGKRAIN WRADKPSTLYWAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLRYGGIYWCDDSLALVYESWYKTRRTRTWVISPGSKDASPRILFDRSSED VYSDPGSPMLRRTPAGTYVIAKIKKENDEGTYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYETVVALMLDYEEGDLLLDRLQILTSKESK TENRQYFIQKWPEKKACQITNFPHPYPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDLSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKFAGIGSTSA LLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQRGVAHPNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQH EDRTLWEASTTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLNMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKHCVQNPTDA SAELDACKDEVSNGVRDSDNQAVVASGGGGPELADFEHEGFYSLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	0	1
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	2.00	0.9090	Pt-ATMRP14.3
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	3.46	0.9007
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	5.47	0.8925
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	7.34	0.8871
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G069733 [exp]	7.48	0.8765
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	7.74	0.8937
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	7.93	0.8981
AT2G47390			Prolyl oligopeptidase family p...		Potri.014G120600 [exp]	8.06	0.8933
AT5G57340			unknown protein		Potri.006G165500 [exp]	8.12	0.8545
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	11.40	0.8792

Compare expression of checked genes

Potri.002G196000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.