Plant FIBer expression Database

Potri.002G196300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02030 1020 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G120900
[exp]
1336 / 0 AT4G02030 1004 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041387
[exp]
1050 / 0 AT4G02030 1051 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Lus10036541
[exp]
308 / 3e-96 AT4G02030 284 / 3e-87 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF08700 Vps51 Vps51/Vps67
Representative CDS sequence
>Potri.002G196300.1 pacid=42779409 polypeptide=Potri.002G196300.1.p locus=Potri.002G196300 ID=Potri.002G196300.1.v4.1 annot-version=v4.1
ATGGGGGAGGACGATATGCCGATGGATGACAAGGCAAAGAGAATGAGAGATCTGTTATCAAGCTTCTATTCTCCAGATCCTTCAGTTACCAATGCTAATA
ATCCTTTCAAATTTGCTTCCTTAGATGTCATCAACACCACCTCCTTCGATGCAGATCAGTACATGAATCTGCTGGTGCAAAGATCAAACTTGGAAGGGCT
TTTGCAGAAGCATGTTGAGATGGCAGCTGAGATAAAGAATCTAGACACTGATTTGCAAATGTTAGTTTATGAAAACTACAACAAGTTTATTAGTGCCACT
GACACAATCAAAAGGATGAAAACTAATATTGTTGGCATGGAAACGAATATGGAGCAGCTCCTCGATAAGATAATGACTGTGCAATCAAGAAGTGATGGCG
TGAACACTTCTCTTTTCGAGAAGAGAGAACATATAGAGAAATTGCATCGCACACGCAACCTTCTTCGAAAAGTTCAGTTCATATATGATCTACCTGCTAG
ACTTGGGAAGTGTATTAAATCAGAGGCATATGCTGATGCAGTCAGGTTCTACATTGGAGCAATGCCAATTTTTAAGGCGTATGGGGACTCATCATTCCAG
GATTGTAAGCGAGCATCCGAAGAAGCTATGGACACGATTATAAAAAATCTGCAGGGAAAGCTATTCTCGGATTCTGAATCCATACAAGCAAGGGCTGAGG
CTGCTGTACTTCTTAAACAGTTGGATTTTCCGGTGGACAGCTTAAAAGCAAAACTGTTTGAAAAGTTAGAACAATCTCTTGATGGCCTTCAGCTCACGCA
TGAAGAGATAGCCAATGTTACGGTTGAATCTAGTAACCTTTCTGAGCAAGGAAATAATACTGAGTCAATTCCTGGTTCTGCACATGGTGCTTTAGTTAGT
GAGTTTGCTGAAGCTGTTCGAGCTTATCAAGTAATATTTCCTGACTCAGAAAAGCAACTGATTAAACTTTCTCAAGACTTGATTACCAAGCACTTCGAGA
TCACTTCGGATTTTATAAAGAAGTGGATTCCCATTGCTAATTTTCTGGGTGTTCTTCGAATTATATGGAAAGATGTGCTCCTGATAGATAAGGTGTTGCA
TGAGGCTCTTCTCCCCGATTATTCTTCGAAGGCTTCCCGGATTGCTGTCAGACAATATATAAAAAGGACATTTTCTCACCTTCTGCATGATATCTCAGAT
GCCCTAACCAATGTCCATATCAAACCAAAGGAGGAAGTGGATGAGCATCCTCTGGTGGTTTTCCTGGAGGCAGGCAAAAGCTCAGTGCTTCAAGGGAGCG
TGAATGTCTTACTGGACTTCCGCCAACTTCTCAAGGAAAACTTAGGAGGGCTTCAACTGAGTGGCTTGATTGTTGATTGGGTTCAAGAAGGATTTCAAGA
TTTCTTCAGGGCACTGCATGATCAGTTCTTCTTGCTTTCAGGGAAAAATAAATCTGCCATTCAAGATGAAAATTCCACAAAGGGTATGCAGGTTGAGAAA
GTGGTTCCTGGTCTTGTCCTGGTGCTGGCTCAACTGTCTATTTTTATTGAACAAACTGCCATCTCTAGAATTACTGAGGAAATAGCTGCTTATTTCTCTG
GTGGTGGTGGTGGGGCTCATGAAAATGGGCCAGCATTTGTTCCTGGTGAAATTTGTCGAACCTTCCATTCAGCTGGTGAAATTCTTCTACAGCATTATAT
AAATATGAGAACTCAAAAAATAACGGTTCTCCTGAGGAAGAGGTTTACAGCTCCAAATTGGGTCAAGCACAAGGAGCCAAGAGAAGTTCATATGTTTGTT
GATTTATTCCTTCAAGAGTTGGAAGCAATTGGAACAGAGGCAAAGCAGATCCTACCTCATGGAGTACTTCGCAAGCATCGTCGCTCTGAAAGCAATGGAA
GCTCTGCTTCCTCCCGCAGCAATTCATTACGGGATGACAAAATGAGTCGGTCAAACACCCATCGGGCCAGGAGTCAACTTCTTGAAAAACACCTAGCGAA
ATTGTTCAAGCAAAAAGTTGAGATTTTTACAAAAACCGAATATACTCAGGAATCTGTTGTAACTACTGTTGTAAAACTCTGTCTTAAAAGTTTGCAAGAA
TATGTTAGACTCCAGACTTTCAACCGGAGTGGATTTCAGCAAATTCAATTGGATGTTCAGTTTCTAAGGGCTTCTCTAAAGGAAATTGTTGAAGATGAAG
CTGCTGTTGACTTTTTGCTTGATGAGGTGATTGTTGGTGCTTCGGAACGCTGCCTTGATCCAATTCCTCTGGAGCCTCCTATCTTGGATAAATTAATTCA
AGCAAAGTTGGCAAAAGAGAAGGAACAGACTCCAATTTCTCCATAA
AA sequence
>Potri.002G196300.1 pacid=42779409 polypeptide=Potri.002G196300.1.p locus=Potri.002G196300 ID=Potri.002G196300.1.v4.1 annot-version=v4.1
MGEDDMPMDDKAKRMRDLLSSFYSPDPSVTNANNPFKFASLDVINTTSFDADQYMNLLVQRSNLEGLLQKHVEMAAEIKNLDTDLQMLVYENYNKFISAT
DTIKRMKTNIVGMETNMEQLLDKIMTVQSRSDGVNTSLFEKREHIEKLHRTRNLLRKVQFIYDLPARLGKCIKSEAYADAVRFYIGAMPIFKAYGDSSFQ
DCKRASEEAMDTIIKNLQGKLFSDSESIQARAEAAVLLKQLDFPVDSLKAKLFEKLEQSLDGLQLTHEEIANVTVESSNLSEQGNNTESIPGSAHGALVS
EFAEAVRAYQVIFPDSEKQLIKLSQDLITKHFEITSDFIKKWIPIANFLGVLRIIWKDVLLIDKVLHEALLPDYSSKASRIAVRQYIKRTFSHLLHDISD
ALTNVHIKPKEEVDEHPLVVFLEAGKSSVLQGSVNVLLDFRQLLKENLGGLQLSGLIVDWVQEGFQDFFRALHDQFFLLSGKNKSAIQDENSTKGMQVEK
VVPGLVLVLAQLSIFIEQTAISRITEEIAAYFSGGGGGAHENGPAFVPGEICRTFHSAGEILLQHYINMRTQKITVLLRKRFTAPNWVKHKEPREVHMFV
DLFLQELEAIGTEAKQILPHGVLRKHRRSESNGSSASSRSNSLRDDKMSRSNTHRARSQLLEKHLAKLFKQKVEIFTKTEYTQESVVTTVVKLCLKSLQE
YVRLQTFNRSGFQQIQLDVQFLRASLKEIVEDEAAVDFLLDEVIVGASERCLDPIPLEPPILDKLIQAKLAKEKEQTPISP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02030 Vps51/Vps67 family (components... Potri.002G196300
[exp]
0 1
AT1G16780 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase fa... Potri.010G254200
[exp]
2.82 0.9313
AT2G03480 QUL2 QUASIMODO2 LIKE 2 (.1.2) Potri.010G159400
[exp]
3.16 0.9443
AT5G42080 RSW9, DRP1A, AG... RADIAL SWELLING 9, DYNAMIN-REL... Potri.001G090600
[exp]
3.46 0.9340 ADL1.1
AT5G56890 Protein kinase superfamily pro... Potri.006G152000
[exp]
4.24 0.9236
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Potri.003G015300
[exp]
6.48 0.9378
AT3G43300 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFF... Potri.006G216900
[exp]
6.63 0.9040
AT3G60740 TFCD, EMB133, C... TITAN 1, TUBULIN FOLDING COFAC... Potri.014G067400
[exp]
7.34 0.9114 Pt-TTN1.1
AT1G20540 Transducin/WD40 repeat-like su... Potri.002G011200
[exp]
7.54 0.9091
AT5G54440 CLUB, AtTRS130 CLUB (.1) Potri.011G123900
[exp]
8.24 0.9123
AT1G16860 Ubiquitin-specific protease fa... Potri.008G006000
[exp]
12.64 0.9242

Potri.002G196300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.