Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02090 92 / 3e-23 unknown protein AT3G03280 59 / 4e-11 unknown protein AT5G17350 50 / 9e-08 unknown protein AT2G01340 49 / 6e-07 At17.1 unknown protein AT4G37240 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122100 [exp] 242 / 5e-82 AT4G02090 94 / 7e-24 unknown protein Potri.008G127200 [exp] 57 / 4e-10 AT3G03280 127 / 2e-37 unknown protein Potri.010G116000 [exp] 55 / 2e-09 AT3G03280 131 / 4e-39 unknown protein Potri.017G121200 [exp] 52 / 2e-08 AT3G03280 145 / 7e-45 unknown protein Potri.004G094000 [exp] 49 / 3e-07 AT3G03280 143 / 1e-43 unknown protein Potri.001G070700 [exp] 45 / 1e-05 AT1G28190 150 / 2e-44 unknown protein Potri.012G045600 [exp] 44 / 1e-05 AT1G18290 129 / 1e-38 unknown protein Potri.003G160000 [exp] 44 / 2e-05 AT1G28190 168 / 4e-51 unknown protein Potri.006G105500 [exp] 41 / 0.0001 AT3G03280 65 / 2e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010014 [exp] 135 / 9e-40 AT4G02090 127 / 2e-36 unknown protein Lus10035268 [exp] 59 / 7e-11 AT5G17350 116 / 4e-33 unknown protein Lus10013490 [exp] 55 / 3e-09 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 54 / 5e-09 AT3G03280 109 / 3e-30 unknown protein Lus10036005 [exp] 40 / 0.0008 AT2G01340 174 / 2e-54 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.002G196900.1 pacid=42780225 polypeptide=Potri.002G196900.1.p locus=Potri.002G196900 ID=Potri.002G196900.1.v4.1 annot-version=v4.1 ATGGGAAACTACATCACATACCCCAATTCATCAAACTCTGCTGCAGGGACTGGGAGAGTGATTCTATGGGATGGCAAGGTTTTTGAGTTTGACACGCCCC TAACAGCGGCTGAGCTAATGCTGGAGTATCCACAGCAAGTCGTGGTCGAGTTTCGCTCGGATTTTACTGAAAAAAGGCCAGCACCATTGCCTGCTGACAA GAGGCTAGACTTGAAGAAGGTGTACCTAATGCTGCCCATTAAGCGAGGGAAACCAGCATCATTGTCATCAGGGGAAGCGAGGCGTGTTCTTTTGAGTGCA AACTCGGTTTTAAGGTCACGGTCCCTTCTATCATCGTCAAGGTTTTTCCCTTTATTTGCTAGGATATGCCCTTCTGGAACTGGAGAGGAGCAAATATTTG TTATGCAAAAGAAGGAATGTCACGTGGAGGAGAAGCCAGCCATGGAGAATTATGATTCCGAGTTAACAGAGATTTCTGAGAGTAGGCCCGAGTATTTGAG TAGGCAGCTTTCTGGTAAAGGGACTTGGAAGCCCAGCTTGGATACTATCAAGGAGAAAAAGGTTGAGAAAAAAACCCCTCACTGGTTGTTTTGA
AA sequence Show only first row Show all	>Potri.002G196900.1 pacid=42780225 polypeptide=Potri.002G196900.1.p locus=Potri.002G196900 ID=Potri.002G196900.1.v4.1 annot-version=v4.1 MGNYITYPNSSNSAAGTGRVILWDGKVFEFDTPLTAAELMLEYPQQVVVEFRSDFTEKRPAPLPADKRLDLKKVYLMLPIKRGKPASLSSGEARRVLLSA NSVLRSRSLLSSSRFFPLFARICPSGTGEEQIFVMQKKECHVEEKPAMENYDSELTEISESRPEYLSRQLSGKGTWKPSLDTIKEKKVEKKTPHWLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02090			unknown protein		Potri.002G196900 [exp]	0	1
AT2G23690			unknown protein		Potri.009G110600 [exp]	9.21	0.6531
AT1G67920			unknown protein		Potri.015G034800 [exp]	20.19	0.6089
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Potri.001G006700 [exp]	26.88	0.6202
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Potri.016G089500 [exp]	28.98	0.5592	Pt-PIP2.2
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G437950 [exp]	43.95	0.6016
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Potri.006G128200 [exp]	44.18	0.6009
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.012G086700 [exp]	46.66	0.5556	WNK3.2
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	52.99	0.5414
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.004G007700 [exp]	67.26	0.5122
AT1G75160			Protein of unknown function (D...		Potri.002G262400 [exp]	70.61	0.5612

Compare expression of checked genes

Potri.002G196900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.