Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02640 1189 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 1074 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G64570 912 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 867 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT3G19620 835 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 758 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 748 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 536 / 0 Glycosyl hydrolase family protein (.1) AT3G47050 165 / 8e-43 Glycosyl hydrolase family protein (.1.2) AT3G47000 163 / 2e-42 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122200 [exp] 1430 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 1176 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 1153 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G206800 [exp] 930 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 884 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.001G294700 [exp] 837 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 791 / 0 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 790 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 769 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010015 [exp] 1210 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10016858 [exp] 950 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10020966 [exp] 884 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10022374 [exp] 772 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 758 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 739 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 508 / 5e-173 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 284 / 1e-86 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10025036 [exp] 212 / 3e-63 AT5G09730 182 / 4e-53 beta-xylosidase 3 (.1) Lus10037728 [exp] 179 / 2e-52 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G197200.1 pacid=42778926 polypeptide=Potri.002G197200.1.p locus=Potri.002G197200 ID=Potri.002G197200.1.v4.1 annot-version=v4.1 ATGCCCGCATCCCTCGTTTTTATCCTCTTGGTTCTTTTCTTGGGTGTTTCTCTGCAAACCAGCGAAGCTCTGGACCCCTTTGCTTGTGACCCAGAAGATG GGACGAGCAGGAACTTTCCATTTTGCCAAGTGAAGTTGCCAATACAAAGCAGAGTCAGTGACCTTATTGGAAGGATGACATTGCAAGAGAAGGTTGGGTT GCTAGTGAACGATGCTGCGGCAGTTCCACGGCTCGGGATTAAAGGGTATGAGTGGTGGTCCGAGGCTCTTCATGGAGTTTCCAATGTGGGTCCAGGGACC CAGTTTGGTGGGGCCTTCCCTGGGGCCACTAGCTTCCCTCAAGTGATCACCACCGCTGCTTCTTTCAATGCAACTTTGTGGGAGGCCATTGGTCGGGTTG TGTCAGATGAAGCAAGAGCAATGTTCAATGGAGGGGTGGCCGGGCTCACATATTGGAGCCCAAACGTGAACATATTCAGGGACCCAAGGTGGGGTCGTGG ACAGGAGACTCCCGGTGAGGACCCAGTAGTAGCTGGTAAATATGCTGCAAGTTATGTTAGAGGTTTACAGGGGAATGACGGTGACCGGCTGAAGGTGGCT GCTTGTTGCAAGCACTTCACGGCCTATGACCTCGATAACTGGAATGGGGTTGATCGGTTCCACTTCAACGCCCAGGTAAGCAAGCAGGACATGGAAGATA CATTTGATGTACCATTCAGGATGTGTGTGAAAGAAGGCAAGGTGGCAAGTGTTATGTGCTCTTACAATCAAGTGAATGGGATCCCCACTTGCGCTGACCC AAAGCTGCTAAAGAAAACTGTACGTGGTCAGTGGAAACTTGATGGGTACATTGTTTCAGACTGCGACTCAGTTGGGGTTTATTATAGTCAGCAACACTAT ACTACAACCCCAGAAGAAGCAGCTGCTGATGCTATTAAAGCAGGTTTAGATTTGGACTGCGGACCATTCCTAGGTCAACACACCGAGGATGCAGTGAGAA AGGGCTTGCTAACTGAGGCAGAAATAAATAATGCATTACTTAACACACTGACAGTCCAGATGAGGCTAGGGATGTTTGATGGTGAGCCATCATCAAAGCC ATATGGGAACCTAGGCCCAACAGATGTGTGCACGCCAGCTCACCAAGAGCTTGCCCTTGAAGCGGCAAGACAAGGCATTGTGCTTCTCAAGAATCATGGT CCTCCATTGCCTTTATCTACCCGCCATCATCAATCCGTTGCCATCATTGGGCCTAATTCGAATGTCACTGTTACGATGATCGGCAATTATGCCGGTGTGG CCTGTGGATACACAACACCCCTACAAGGGATAGGGAGATACGCCAAGACAATATACCAGCAAGGTTGTGCAGATGTTGCTTGTGTTAGTGACCAGCAATT TGTCGCAGCAATGGACGCAGCACGTCAAGCGGATGCAACGGTTCTAGTAATGGGGCTTGACCAGTCTATTGAGGCAGAATCCAGAGATAGGACTGAGCTT CTTCTACCTGGACGCCAACAAGAGCTTATATCCAAGGTTGCCGCAGCATCGAAGGGCCCAACCATATTGGTCTTGATGTCTGGGGGGCCTATTGATGTGT CTTTCGCTGAGAATGATCCAAAAATTGGAGGCATCGTATGGGCTGGTTATCCTGGCCAAGCTGGAGGAGCAGCCATTTCTGATGTCTTGTTTGGAACTAC TAACCCAGGAGGCAAGCTACCTATGACATGGTACCCACAAGATTATGTCACAAATTTGCCTATGACAAACATGGCCATGCGACCAAGCAAATCAAATGGC TATCCTGGAAGAACCTATAGATTCTATAAAGGTAAAGTGGTGTACCCATTTGGTCACGGAATAAGCTACACAAATTTTGTTCATACCATTGCAAGTGCAC CAACAATGGTTTCTGTACCCCTTGATGGACACCGCCAGGCCTCCAGAAATGCAACCATTTCAGGAAAGGCAATCAGAGTTACACATGCTAGATGTAATAG GCTGTCGTTTGGAGTGCAAGTAGACGTGAAAAACACTGGCTCCATGGATGGAACTCACACATTGCTCGTCTACTCTAAACCACCAGCAGGGCATTGGGCT CCTCTCAAACAATTAGTGGCCTTCGAAAAAGTGCATGTTGCAGCAGGGACTCAGCAAAGAGTGGGAATTAACGTTCATGTTTGCAAATTCTTGAGTGTTG TGGACAGATCTGGAATTCGAAGAATTCCAATGGGAGCACATAGTCTTCATATTGGTGACGTGAAGCACTCGGTGTCACTTCAAGCCTCAATTCTAGGTGT GATCAAGTCTTAA
AA sequence Show only first row Show all	>Potri.002G197200.1 pacid=42778926 polypeptide=Potri.002G197200.1.p locus=Potri.002G197200 ID=Potri.002G197200.1.v4.1 annot-version=v4.1 MPASLVFILLVLFLGVSLQTSEALDPFACDPEDGTSRNFPFCQVKLPIQSRVSDLIGRMTLQEKVGLLVNDAAAVPRLGIKGYEWWSEALHGVSNVGPGT QFGGAFPGATSFPQVITTAASFNATLWEAIGRVVSDEARAMFNGGVAGLTYWSPNVNIFRDPRWGRGQETPGEDPVVAGKYAASYVRGLQGNDGDRLKVA ACCKHFTAYDLDNWNGVDRFHFNAQVSKQDMEDTFDVPFRMCVKEGKVASVMCSYNQVNGIPTCADPKLLKKTVRGQWKLDGYIVSDCDSVGVYYSQQHY TTTPEEAAADAIKAGLDLDCGPFLGQHTEDAVRKGLLTEAEINNALLNTLTVQMRLGMFDGEPSSKPYGNLGPTDVCTPAHQELALEAARQGIVLLKNHG PPLPLSTRHHQSVAIIGPNSNVTVTMIGNYAGVACGYTTPLQGIGRYAKTIYQQGCADVACVSDQQFVAAMDAARQADATVLVMGLDQSIEAESRDRTEL LLPGRQQELISKVAAASKGPTILVLMSGGPIDVSFAENDPKIGGIVWAGYPGQAGGAAISDVLFGTTNPGGKLPMTWYPQDYVTNLPMTNMAMRPSKSNG YPGRTYRFYKGKVVYPFGHGISYTNFVHTIASAPTMVSVPLDGHRQASRNATISGKAIRVTHARCNRLSFGVQVDVKNTGSMDGTHTLLVYSKPPAGHWA PLKQLVAFEKVHVAAGTQQRVGINVHVCKFLSVVDRSGIRRIPMGAHSLHIGDVKHSVSLQASILGVIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.002G197200 [exp]	0	1
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.014G122200 [exp]	1.00	0.9677
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.005G075900 [exp]	1.73	0.9338	ANN1.3
AT1G02810			Plant invertase/pectin methyle...		Potri.014G127000 [exp]	3.00	0.9206
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	4.00	0.9395	Pt-VLN4.2
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	12.32	0.9210	PtrAUX8
					Potri.009G092300 [exp]	12.48	0.9247	AGP9.1
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Potri.009G064300 [exp]	12.96	0.9017	Pt-DRT100.1
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Potri.002G228200 [exp]	13.67	0.9108
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	15.87	0.9222
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	16.27	0.9315

Compare expression of checked genes

Potri.002G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.