Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02100 647 / 0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G47440 639 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62570 590 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02650 530 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 74 / 2e-13 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 68 / 1e-11 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G30480 47 / 2e-05 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT5G49060 43 / 0.0005 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122300 [exp] 889 / 0 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.009G050200 [exp] 91 / 8e-19 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 86 / 3e-17 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.006G047700 [exp] 86 / 5e-17 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.001G255000 [exp] 81 / 1e-15 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010272 [exp] 749 / 0 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10036335 [exp] 696 / 0 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10002438 [exp] 666 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 82 / 5e-16 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019041 [exp] 79 / 4e-15 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 79 / 5e-15 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G197300.3 pacid=42779341 polypeptide=Potri.002G197300.3.p locus=Potri.002G197300 ID=Potri.002G197300.3.v4.1 annot-version=v4.1 ATGGCTGCTTCTACTTCTCCTTGTCCAAGTATGAATGAAAAGAAGCACTGGTGGCTAAGCAACCGGAAGATTGTGGACAAGTACATTAAAGATGCAAGAA ACCTGATTGCAAGCGAAGAACAGAGCGAGATTGCGTCGGCTCTTAAGCTTCTAGACGCGGCACTTGCACTCTCTCCTCGCCTAGAAGTAGCTCTTGAACT CAAAGCAAGATCTTTGCTCTATCTTAGGCGATTCAAGGAGGTGGCTGATATGCTTCAAGACTACATTCCTAGCCTTAAAATGGCTAACGACGATTCGGGA TCTATTTCTTCTTCTGATAGTTCTTCTCAGCAGCTTTCAAGAGAGCGAGTTAAGCTGCTGCCTTCAGATAACTCTGATCCAAGTTTCAAGTGTTTCTCTG TCTCCGACTTGAAGAAGAAAGTGATGGCCGGACTCTGTAAAAATTGCGATAAAGAAGGGCAATGGAGGTACCTGGTTTTAGGCCAAGCTTGCTGCCATCT AGGTCTAATGGAGGATGCCATGGTGCTTCTCCAGACCGGAAAACGCCTGACAACTGCTGCATTCCGCCGTCAAAGCATTTCCTGGTCAGAGGACAGCTTC TCTCTCTCAAACTTCCCAATCTCCAGCGATATATCCACATCGACAGCCCCACCTACCCCACCGAGAAATTTAACCGAATCTGAAAGCGTTACGCAACTCC TTGCCCACATTAAGCTACTGCTTCGCCGCCGAACAGCCGCGCTGGCGGCCCTGGATGCTGGCCTCTATTCCGAGGCCATCCGCCACTTCACTAAGATCTT GGAGGGCCGACGAGGGGCCCCACAGGGATTCCTTGCTGAATGCTATATGCATAGAGCTTATGCATACAAAGCATCAGGAAGAATTGCAGAGTCCATTGCT GATTGCAACAAGACTTTAGCTTTAGAACCCGCCTGCATTCAGGCGCTTGATACAAGAGCTTCTCTTCTGGAAACAATCCGGTGCTTGCCCGATTGTTTAC ATGATCTGGAGCACTTGAAACTACTGTATAATTCAATCTTGAGGGATAGGAAGCTACCAGGTCCTGCTTGGAAGCGGCACAAGGTTAGGTACAGAGAGAT TCCTGGGAAACTTTGTGCATTGACTACCAAGATTCAAGAACTGAAGAAGAGAGTTGCTTCTGGGGAGACTAGAAATGTTGATTATTATGCTTTGATTGGA TTAAGGCGTGGGTGTTCGAGATCCGAATTAGAGAGAGCTCATCTGTTATTGAGTTTGAGGCACAAGCCTGATAAGTCTATAAATTTCGTTGAGAGGTGTG ACTTTGCAAATGATATGGATCTTGAATCGGTAAAAGACAGAGCAAAAATGTCTGCTTTGTTGCTCTATAGATTGCTTCAAAAGGGTTATTCTAACGTCAT GTCAACAATCATGGATGAAGAGGCTGCAGAGAAGCAAAGAAAGAAAGCAGCAGCCATTCAAACCCAACAGACAACTCAAAATGCCAAAATGGAATCGAAC CCATCTGCAGTGGAGATTTCTGGTCCCAACAGGATCAATTCCAATGAAAATAAAGTGGCATCTGCATCTTCAGGGAGCAACACTGCATCTGTCTTTCAAG GGGTGTTTTGCCGCGACCTTGCTGCGGTTGGGAATTTGCTATCACAAGCTGGGTTTAACCGTCCACTTGCAGTGAAATTCGAAGCATTAAGCTGCTAA
AA sequence Show only first row Show all	>Potri.002G197300.3 pacid=42779341 polypeptide=Potri.002G197300.3.p locus=Potri.002G197300 ID=Potri.002G197300.3.v4.1 annot-version=v4.1 MAASTSPCPSMNEKKHWWLSNRKIVDKYIKDARNLIASEEQSEIASALKLLDAALALSPRLEVALELKARSLLYLRRFKEVADMLQDYIPSLKMANDDSG SISSSDSSSQQLSRERVKLLPSDNSDPSFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLTTAAFRRQSISWSEDSF SLSNFPISSDISTSTAPPTPPRNLTESESVTQLLAHIKLLLRRRTAALAALDAGLYSEAIRHFTKILEGRRGAPQGFLAECYMHRAYAYKASGRIAESIA DCNKTLALEPACIQALDTRASLLETIRCLPDCLHDLEHLKLLYNSILRDRKLPGPAWKRHKVRYREIPGKLCALTTKIQELKKRVASGETRNVDYYALIG LRRGCSRSELERAHLLLSLRHKPDKSINFVERCDFANDMDLESVKDRAKMSALLLYRLLQKGYSNVMSTIMDEEAAEKQRKKAAAIQTQQTTQNAKMESN PSAVEISGPNRINSNENKVASASSGSNTASVFQGVFCRDLAAVGNLLSQAGFNRPLAVKFEALSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02100			Heat shock protein DnaJ with t...		Potri.002G197300 [exp]	0	1
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	2.00	0.8753
AT2G40980			Protein kinase superfamily pro...		Potri.004G137600 [exp]	12.48	0.8509
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	14.28	0.8586
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	14.83	0.8248
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Potri.003G050900 [exp]	14.96	0.8172	Pt-TIP2.3
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.011G064500 [exp]	21.44	0.8253
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	23.83	0.8323
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	24.49	0.8132
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	25.29	0.8439
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	26.26	0.8173

Compare expression of checked genes

Potri.002G197300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.