Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02110 374 / 6e-110 transcription coactivators (.1) AT1G67180 69 / 1e-11 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT1G77320 57 / 9e-08 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT5G44800 47 / 0.0001 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G14700 46 / 0.0002 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT5G24330 44 / 0.0005 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT2G41450 44 / 0.0005 N-acetyltransferases;N-acetyltransferases (.1.2) AT5G63900 44 / 0.001 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122400 [exp] 1689 / 0 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.004G106000 [exp] 71 / 4e-12 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.005G182500 [exp] 63 / 1e-09 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.015G009632 [exp] 52 / 1e-06 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.002G259000 [exp] 51 / 4e-06 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.003G110100 [exp] 51 / 5e-06 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G358100 [exp] 51 / 6e-06 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.001G123400 [exp] 50 / 1e-05 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.012G018300 [exp] 48 / 2e-05 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001455 [exp] 834 / 0 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10010017 [exp] 400 / 4e-122 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10025038 [exp] 398 / 1e-121 AT4G02110 368 / 1e-109 transcription coactivators (.1) Lus10002432 [exp] 291 / 5e-90 AT4G02110 240 / 7e-72 transcription coactivators (.1) Lus10002431 [exp] 196 / 5e-53 AT4G02110 184 / 2e-49 transcription coactivators (.1) Lus10034088 [exp] 79 / 1e-14 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10000854 [exp] 54 / 1e-06 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10028677 [exp] 52 / 4e-06 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10031279 [exp] 50 / 1e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10036223 [exp] 50 / 2e-05 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Potri.002G197400.2 pacid=42779579 polypeptide=Potri.002G197400.2.p locus=Potri.002G197400 ID=Potri.002G197400.2.v4.1 annot-version=v4.1 ATGCTGGAAACAGATTCTCATTCCAAAACGTTTCTCGGCGTCCGTTTCGTTCTCTTTGGTTTCGATCCCATCAGCGAAACCGAGGTTAAATCAAAGCTTG TCAATGGCGGCGGCGTTGATGCTGTTCAGTATAGTGAGAACTGCACTCACGTCATTGTCGATAAGATTGTTTACGATGATCCTGTATGTGTTGGTGCAAG AAATGATGGAAAGACGGTTGTGAGAGGATTATGGGTTAATCATAGTTTTGATATTGGGATGCCTGTTGATGCCACTTCTATAATGTATCGACCGCTTAGA GATTTGAATGGAATTCCGCGTGCCAAGAATATAACAATGTGCTTGACTGGGTACCAACGCCAAGATCGAGATGACATTATGACCATGGTTGGCTTGATGG GGGCACATTTTTCTAAGCCATTGGTGGCTAACAGAGTTACTCATCTCATCTGCTACAAATTTGAAGGTGAGAAGTATGAGCTTGCCAATAAAATGAAGAA GATAAAGCTTGTTAATCATCGATGGTTGGAAGATTGCTTAAGAAATTGGGAGCTTCTTCCAGAAGATAATTATAGCAAGAGTGGCTATGAGTTGGAGATG CTGGAAGCTGAAGCAAAAGACTCTGAGGATGAAGCTGAGGGTACCAGTGTGAAGCAACCAAGTTGTGAAAATGTGAATAAGAGTCAGAATTTAAAAGCTG GAACATCCAAGTCTTGTGAAATGCCCAAAACTGGGGAAGTGCTGAAAGTATCACATAATTTGAGTGAGCCTGAAGGTCTATCAAGGGTGCCTGGCCATTT GGACGCTTGTGGCTTCAAGGGTGCCTCTTCCAATGATCCACCTGATCCAAAAGAGAGGACTCCTATTTCTACAAGGACAAGCAATGACTTGGAATTTGTT TCTAGAATTGTTGAAAGGCCTTCTCATTCTGATGCTAAGTATAATGCTACAATAAGTTACACAAGGAGAACTCCACGAAGGTCCCCATCATCAATTTACC CTGGAAACTCAGGCAACACTAGAGGCTCTCCTAAAGTTCTCTTAGGTGAATCCGTCAACAAGTCTTCTGCCAAAGTTCTGAATCCATCAGTTACAAACGC AGTTCAAGGTTCTGAACCAACACATTTGGTGGATGGTCCATCTAGGATTAATAACCATTCTCCTCTTGGCAATACTGGTCACTCTGTGCATGATATGAGT AGTATGAATGCTGTGCTAAACTCACATGCCAAATATTCAACAGCCAAGTCATCAAAATTTAGTAGAAACACGGTCACAGAAGATAACGCTTTCCTTGCAA ATATGGTCTTGGAAACTGGTGAAAATGAGAGTGCAAATAATAAGACACCACAACCATCCTCCAGGGACTTGAGAGAGAACAACTTGGTCCTCAGGTCTGA TAGTGGAGGTTTTGTTGTTGAAAGATATGAACAGATGGTTGCAGAAGCAGGGGAGCCACAAAATCAGCAGCAAGATGGAGGCGGTCCATTTTCACTTAAG GAATTAGAGATAGATAAATCTGACATGCTTTCTGATTTGCATGTGCTTCGGGCAGGAAAAGATGACTTCATTACAAAGCCAGTTAGGAAGAAGATGATTG CCAAAAAGACTTTAGGTTCTAGATCAAAATTGAAAAGCAATGAGAGCCAGAAAGGTTCCATATACTTAAATGCAACTGCTTCTCAAAATGATCCTACAGT TACTATGGCTGAGGTGAAAGAGAGAGAAGAGGATGGGAATTTTTCTGATGCCACTGAGCTTGAGACATCCCTGGCAATTGTCAATGTTGCAGTAACAGAG AAGATGGAGACGGAAAGTGCTACAAAGCTGGGGAATAATATTGAGGTTAAGATTGGTTTCATGGATGATGAGACTGAGGCTCCAGATGAGAAAAATGAAT GTGAAAACTTTCTCGAAGAAGAGCAGGCTGACATGATTGATTTGCCACATAAAGCAGATAATAAGATAGAAATGAAATTAGAAGCAGATAATTCTGCAGC TTACATGCGCAATGGTCCGGTAGAAGGGAAAAATCCAGTTGAAATACAAAAGAGGGATGAATCAATCTTGACAGAAGATTTTGTAAAAGGAAAAGGAAGG AAGCAGCCTTCAGGTAAGACCAATACCAAGACTGTTACTTCGATTGTTAGAAAAGAAGAGTCTAAGAAAGTTCTGAATATGGAAGAGAATCTTAATGGCA AGAAAATTGAGGAGAATGCTGCAGAAAAGGAAAGCACTGAGCCACATCGTGCAGGTCAAGGTAAAAGCAGAATTATATCTAGGAAAAAGTCCAAGAACTC TGTGGAAGCTGAGAAGGAGAATAAGCCTGCTGTTGATGGAGATCAATATGCAAGTCTGGATGACAAGCGTGTTGGTGAAACAGCTGCTAAATCCAATAAA GCACCGGTGAAGTTTAATCATAAGGTTAGTAAAAGTAATCTTGGTTCTACAACAGGAAGAGAGGTTACAAAGCAAGTGAAAGCCGAACCCCTATGGTTTA TATTGAGTGGGCATAGATTGCAAAGGAAGGAGTACCAGAAAGTTATTAAGAGTTTGAAAGGAAAACTCTGCAGAGATTCTCATCAATGGTCATACCAGGC AACACACTACATAGCTCCAGGCCCAATTCGCAGGACAGAAAAGTTTTTTGCTGCTGCAGCATCTGGAAGGTGGATTCTTAAGACGGATTATTTAACTGCT TGTAGTCAGGCAGGGAGGTTCTTGGCAGAGGAATCTTATGAATGGCACAAGAATGGCCTTAGCGAAGATGGAACAATTAACTTAGAGGCTCCAAGGAAGT GGCGGCTGTTGAAGGAGAGAACAGGTCATGGAGCCTTCTATGGGATGCGTATTATCATTTATGGAGAATGCATGACACCACCTTTGGATACTCTGAAACG TGTAGTGAAGGCAGGGGACGGTACCATCTTAGCAACTTCTCCTCCTTACACCCGTTTTATTACATCTGGAGTTGACTTTGCTATCATCAGTCCTGGCATA ACACGAGCAGATGTGTGGGTCCAAGAGTTCTTAAAACATAAGATACCCTGCATCGTTGCTGATTACTTGGTGGACTATGTCTGCAAGCCTGGGAATTCTC TTGAGAGACATGTACTGTACAATACCAATGATCTGGCAGAGAAGTCATTTTCCAACCTTTTGAGCAAGGCAGAAATGATTCCTGAGGACTTGACAATGTC AAAGGATTGTGATGGTGGTGATGATATAGCCTGTGAAGTTTGTTGTTCTTGCGATAGAGGGGAAGATATGCTGATATGCGGTGATGAATGTGGCTCTGTT GGCTGTGGGGCTGGGATACATATAGACTGCTGCGATCCTCCTCTTGAAAGCATTCCAGAAGAGGATTGGTTTTGTCCAAAGTGTAGCGGAAGCAGGAGCA CCAGCCCTAAGAAGAAAAGGATTAAAAAGGCACTTCATTAA
AA sequence Show only first row Show all	>Potri.002G197400.2 pacid=42779579 polypeptide=Potri.002G197400.2.p locus=Potri.002G197400 ID=Potri.002G197400.2.v4.1 annot-version=v4.1 MLETDSHSKTFLGVRFVLFGFDPISETEVKSKLVNGGGVDAVQYSENCTHVIVDKIVYDDPVCVGARNDGKTVVRGLWVNHSFDIGMPVDATSIMYRPLR DLNGIPRAKNITMCLTGYQRQDRDDIMTMVGLMGAHFSKPLVANRVTHLICYKFEGEKYELANKMKKIKLVNHRWLEDCLRNWELLPEDNYSKSGYELEM LEAEAKDSEDEAEGTSVKQPSCENVNKSQNLKAGTSKSCEMPKTGEVLKVSHNLSEPEGLSRVPGHLDACGFKGASSNDPPDPKERTPISTRTSNDLEFV SRIVERPSHSDAKYNATISYTRRTPRRSPSSIYPGNSGNTRGSPKVLLGESVNKSSAKVLNPSVTNAVQGSEPTHLVDGPSRINNHSPLGNTGHSVHDMS SMNAVLNSHAKYSTAKSSKFSRNTVTEDNAFLANMVLETGENESANNKTPQPSSRDLRENNLVLRSDSGGFVVERYEQMVAEAGEPQNQQQDGGGPFSLK ELEIDKSDMLSDLHVLRAGKDDFITKPVRKKMIAKKTLGSRSKLKSNESQKGSIYLNATASQNDPTVTMAEVKEREEDGNFSDATELETSLAIVNVAVTE KMETESATKLGNNIEVKIGFMDDETEAPDEKNECENFLEEEQADMIDLPHKADNKIEMKLEADNSAAYMRNGPVEGKNPVEIQKRDESILTEDFVKGKGR KQPSGKTNTKTVTSIVRKEESKKVLNMEENLNGKKIEENAAEKESTEPHRAGQGKSRIISRKKSKNSVEAEKENKPAVDGDQYASLDDKRVGETAAKSNK APVKFNHKVSKSNLGSTTGREVTKQVKAEPLWFILSGHRLQRKEYQKVIKSLKGKLCRDSHQWSYQATHYIAPGPIRRTEKFFAAAASGRWILKTDYLTA CSQAGRFLAEESYEWHKNGLSEDGTINLEAPRKWRLLKERTGHGAFYGMRIIIYGECMTPPLDTLKRVVKAGDGTILATSPPYTRFITSGVDFAIISPGI TRADVWVQEFLKHKIPCIVADYLVDYVCKPGNSLERHVLYNTNDLAEKSFSNLLSKAEMIPEDLTMSKDCDGGDDIACEVCCSCDRGEDMLICGDECGSV GCGAGIHIDCCDPPLESIPEEDWFCPKCSGSRSTSPKKKRIKKALH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02110			transcription coactivators (.1...		Potri.002G197400 [exp]	0	1
AT3G03000			EF hand calcium-binding protei...		Potri.003G095700 [exp]	11.40	0.8057
AT1G28400			unknown protein		Potri.004G048301 [exp]	12.84	0.8152
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	15.55	0.6819
AT1G03820			unknown protein		Potri.017G015700 [exp]	21.74	0.7930
AT1G14890			Plant invertase/pectin methyle...		Potri.010G109300 [exp]	36.66	0.8016
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G166300 [exp]	37.46	0.7924
AT2G23450			Protein kinase superfamily pro...		Potri.002G130600 [exp]	41.56	0.8047
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	43.37	0.7741
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	66.97	0.7678
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	92.81	0.7312

Compare expression of checked genes

Potri.002G197400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.