Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34140 352 / 5e-117 D111/G-patch domain-containing protein (.1.2.3) AT3G54230 48 / 2e-05 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087601 [exp] 69 / 2e-14 ND / Potri.004G081800 [exp] 54 / 3e-07 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138401 [exp] 42 / 0.0005 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.017G138500 [exp] 42 / 0.0007 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039947 [exp] 430 / 2e-147 AT4G34140 350 / 4e-116 D111/G-patch domain-containing protein (.1.2.3) Lus10027680 [exp] 54 / 7e-09 ND 46 / 6e-07 Lus10010955 [exp] 49 / 8e-06 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.002G197500.1 pacid=42778756 polypeptide=Potri.002G197500.1.p locus=Potri.002G197500 ID=Potri.002G197500.1.v4.1 annot-version=v4.1 ATGGCGGGAGACACGGAACCAGATTCTCAAGAGACACAAAGAGACGATTTCGCTTTTGATTGGGATCAAACCACTCAACTCTATTTCCATGCCAGTAGTG GATTTTACCATGACCCAAGTGCTGGCTGGTTCTACAGCAGTAGAGATGGGCTTTATTACAAGTTCGAGAATGGAAGTTATGTGCTTTTAGAATGTAGTGA CAAGGTTAATAATGAATGTGAAAGGGAAACTTTTGTTGATAATCCCCTTCAAGATGAGTCGTTTACGCATGTTGAAGGCAATGTTTATGAAAATCTCTAT TCATTTCCACCAGCAAATGATTCTGAATCTTTCCAACATCGTGGAGTTGTTGTCGATGAAAGCAATCTAGGATACACTGAGTGCAGCAGCATTCAAGAAC CTGAAAATCCGCCTGCACCATCGGAGTGGTTGGAAGAAACACTTATCAACATTTTTTTGTCTGGTTCTAACCGAGCGATTGATGCCTCTGATGATCCTGT GATAGCTTTGAAAATGGATGTCAATAATGATAATTGCAAGCCAGAAGAAGGTGATCCAATCACAGAAGGCCACCATGGCTTAGCTGACCCAGATGCCTCA AGGGATGAAGAAAACTGGCGAGCTCAGTACGGTCAAGTAGTCCATTCCAGGGAAGAGCCAGTGCCAGATTTTCATGCCGTCGATTTATGGGACTGGGAAA TGGTCAAGTGTTCTCGAAAGGTTGGAAAAGGTCAGGAGGCTAGGTTGGCTGGGCAGCTGGTGAAGCGATCTGCAAAGTCTCATCCTTCTATGCCTTCTAG CTGTATTCGCTTTAGAACTGCTCCAATATGTGAAGTACACCTTGACCTGGTACGAGTTAGAACAGGACAAGTTTATAAGTTGCATAGTCCTAGCACAAGA TATTTGGCTTCCATGTCAACTTATGATTCTTCCAATCCAACAAAAGGCTGGGATTTCCCTGAATTATCTATTACCATGCAAGATAGCCCCCTAATAAAAT CCAGTGGAAAAGGTGAATCAAGATCAGCTGATGGAGATGCTGATAGCAAGTGCACGACTGTGTTATCCAATCAACTCTCTGCATCCAAAATGCAAGCAAG CCACGCATACAGGGATAGAGCTGCTGAGAGAAGAAACTTGCATGGTGGTTTTGGTGTGGGCCCTGGACAAAAGAGTTCTTTATTTGGTGATGTGGGTGGC TCTTCATCTGCAGTTTCTACTTCTACAGAGGAAGCTGCTGCTGAAGCCTTGAGCATGTCATTTGGAGCTGGTAGTTATGCCAGGAAAATTCTGGAAAACA TGGGCTGGAAGGAGGGAGAGGCTTTAGGCAACACCACAAAGGGCCTGGTTGAACCGATAAAAGCAGTTGGAAACATGGGCAACGCTGGATTGGGGTGGCC TCAGGGAAGAATGAAGCTCCCTTAA
AA sequence Show only first row Show all	>Potri.002G197500.1 pacid=42778756 polypeptide=Potri.002G197500.1.p locus=Potri.002G197500 ID=Potri.002G197500.1.v4.1 annot-version=v4.1 MAGDTEPDSQETQRDDFAFDWDQTTQLYFHASSGFYHDPSAGWFYSSRDGLYYKFENGSYVLLECSDKVNNECERETFVDNPLQDESFTHVEGNVYENLY SFPPANDSESFQHRGVVVDESNLGYTECSSIQEPENPPAPSEWLEETLINIFLSGSNRAIDASDDPVIALKMDVNNDNCKPEEGDPITEGHHGLADPDAS RDEENWRAQYGQVVHSREEPVPDFHAVDLWDWEMVKCSRKVGKGQEARLAGQLVKRSAKSHPSMPSSCIRFRTAPICEVHLDLVRVRTGQVYKLHSPSTR YLASMSTYDSSNPTKGWDFPELSITMQDSPLIKSSGKGESRSADGDADSKCTTVLSNQLSASKMQASHAYRDRAAERRNLHGGFGVGPGQKSSLFGDVGG SSSAVSTSTEEAAAEALSMSFGAGSYARKILENMGWKEGEALGNTTKGLVEPIKAVGNMGNAGLGWPQGRMKLP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34140			D111/G-patch domain-containing...		Potri.002G197500 [exp]	0	1
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.001G204200 [exp]	6.92	0.5571	Pt-ETR1.1,ETR3
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Potri.001G368900 [exp]	7.87	0.6158
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	11.09	0.5268	Pt-VAP27.5
AT5G64060	NAC	ANAC103	NAC domain containing protein ...		Potri.005G058900 [exp]	26.68	0.5150
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	45.36	0.4534
AT5G57970			DNA glycosylase superfamily pr...		Potri.006G184700 [exp]	56.16	0.4804
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	57.87	0.4714
AT5G44250			Protein of unknown function DU...		Potri.002G127600 [exp]	60.53	0.4882
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	61.48	0.4831
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	79.72	0.4666	SOYAP4.1

Compare expression of checked genes

Potri.002G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.