Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G72100 72 / 2e-14 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 55 / 8e-09 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025037 [exp] 370 / 4e-132 AT3G62580 341 / 7e-121 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10010016 [exp] 368 / 2e-131 AT3G62580 340 / 3e-120 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10000723 [exp] 69 / 2e-13 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10041310 [exp] 66 / 1e-12 AT1G72100 144 / 9e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10021473 [exp] 61 / 8e-11 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10037401 [exp] 50 / 3e-07 AT1G72100 127 / 5e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0430 [poplar] [flax] CopD_like PF13664 [poplar] [flax] DUF4149 Domain of unknown function (DUF4149)
Representative CDS sequence Show only first row Show all	>Potri.002G197800.1 pacid=42779811 polypeptide=Potri.002G197800.1.p locus=Potri.002G197800 ID=Potri.002G197800.1.v4.1 annot-version=v4.1 ATGGGTTGGCTAAGTCGATTCCTAGCAGCGATAGCATTCCTTGCTATAGGCGTGCTCTTTTCTCCAGAAACGTTCGGATCAAAATCGGTCACTCATCTCT CCGCTTACTTGAAGTTGGCTCACCTCCTCTGCTTCTCCACCGCTTTTGGCTCCGCTCTCTGGGTCACTTTCATTGGCGGCATCATCATGTTCAAGAACTT GCCGAGGCATCAGTTTGGTAATTTGCAAAGCAAGATGTTTCCTGCGTATTTTTTATTGGTGGGCGTTTGCTGTGCAATCTCTGTGGCAGCGTTTGGTTAT CTGCATCCATGGAAATCAGCATCCACTGCAGAGAAGTACCAGCTTGGGTTCTTGCTTTCATCTTTTGCTTTCAATCTCACCAATCTGTTTGTCTTTACTC CAATGACAATTGAGATGATGAAGCAAAGGCACAAGGTGGAGCGTGAAGAGAACATTGGGACTGAAGTTGGATGGACAAAGAACAGGGAAGTGGCGAAGGC CAATCCAAAGCTTGCTGCCATGAACAAGAAATTCGGAATGATTCATGGGTTATCATCCCTTGCTAATATCATGTCATTTGGCAGTCTTGCCATGCACTCA TGGTACTTGGCAGGTAAGATTAATCTGTAA
AA sequence Show only first row Show all	>Potri.002G197800.1 pacid=42779811 polypeptide=Potri.002G197800.1.p locus=Potri.002G197800 ID=Potri.002G197800.1.v4.1 annot-version=v4.1 MGWLSRFLAAIAFLAIGVLFSPETFGSKSVTHLSAYLKLAHLLCFSTAFGSALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFLLVGVCCAISVAAFGY LHPWKSASTAEKYQLGFLLSSFAFNLTNLFVFTPMTIEMMKQRHKVEREENIGTEVGWTKNREVAKANPKLAAMNKKFGMIHGLSSLANIMSFGSLAMHS WYLAGKINL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62580			Late embryogenesis abundant pr...		Potri.002G197800 [exp]	0	1
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010900 [exp]	1.00	0.8328
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	3.46	0.7949
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	13.56	0.8048
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.006G025400 [exp]	18.33	0.7292
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	19.18	0.7216
AT3G26380			Melibiase family protein (.1)		Potri.010G048400 [exp]	28.39	0.7388
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.008G189900 [exp]	39.34	0.7504
AT1G72190			D-isomer specific 2-hydroxyaci...		Potri.013G104200 [exp]	43.54	0.7658
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	55.18	0.7535
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000600 [exp]	55.82	0.7621	Pt-BETV1.1

Compare expression of checked genes

Potri.002G197800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.