Plant FIBer expression Database

Potri.002G197900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02660 561 / 0 alpha/beta-Hydrolases superfamily protein (.1)
AT3G62590 501 / 2e-169 alpha/beta-Hydrolases superfamily protein (.1)
AT3G61680 352 / 1e-111 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G169600
[exp]
351 / 2e-110 AT3G61680 576 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.014G097200
[exp]
345 / 2e-108 AT3G61680 580 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010031
[exp]
635 / 0 AT1G02660 702 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10036334
[exp]
635 / 0 AT1G02660 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10009811
[exp]
359 / 8e-114 AT3G61680 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10040915
[exp]
295 / 3e-91 AT3G61680 415 / 1e-138 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF01764 Lipase_3 Lipase (class 3)
Representative CDS sequence
>Potri.002G197900.1 pacid=42777843 polypeptide=Potri.002G197900.1.p locus=Potri.002G197900 ID=Potri.002G197900.1.v4.1 annot-version=v4.1
ATGGATAGTATATGCTTAAAAACAGCTGGGATTCATGGGATAGCGTCAACCATATCAACCGTGAGTGGATCCCAGGTGGAGGCGCGTTCAATTACGAACG
CATCTCAGCTGAGTGCGGTTGCGAGGGATAAATCGACGGCGCCTCAGAAAACGGCGTCGCCAACGTTCTCTTTTAGTCTTAGACGCCCTTGGCAATCTCT
GTGGTCTGGAGGAGGTAAGAGTACCAGGTACAATGGGATGGCTTCAGACGATGCCGTGTTGGTGGAGAATGGGGTGGAGGGCGAGAGCGAAACAATGGGA
TCGAGTGAAGGGGAAAATGGGAACTGGGTTTTGAAGATTTTGCAAGTGAAATCACTTTGGGAAGATGAGAGAAAAGGAAGCTTTGATGTTGTTAATGAAG
AGGTAAGGAAAGAAGGTGATGCTGCTTTGGTGAATGATGAAGAAGAGGAGTGTGATGTGTGTAGAGTTGGAGACGATGATGATGAAGAAGAAGAAGGAGA
GAAAGAGATTGAATTTGATAGAGATTCGTTTTCGAGTTTGTTAAGGAGGGCCTCGTTAGCTGAAGCCAAAATGTATGAGAAAATGTCTTATTTGGGCAAC
TTGGCTTATTGCATTCCTGATATCAAGCCAGAAAGTCTCTTGAAACGCCGTGGTCTCTTCTTTGTGACTTCATCAATAGAGAGAAGGGAAATGGCCATGA
GAACTGAGAAAAATCATGTGCCACCTGAAGATGAAGAAGCAGAAAGCACGATTGCAAAGGATGAGCTGGAAGGCAATGAACAGGAGAATGCTGGGAATCG
CATAAGTGCCTCATCTGCATATCAGATAGCTGCCTCTGCTGCTTCTTATTTGCACTCACATACAAAGAGCATACTTCCTTTAAAATCCTCAAAAGCTGAT
ACTAGTGAGGATTCTTATCAAGGAGGCAATAAAACCATTGGGCCCATTAACACAATGAACCCAGATGTGGCATCTTTTATGGCAACCACTGACTCAATGA
CAGCTGTGGTTGCTGCGAAGGAGGAAGTGAAGCAGGCTGTTGCAGATGATTTGAGCTCGACACGTTCATCACCATGTGAATGGTTTATATGTGATGATGA
TCGGGGTACAAGATTCTTTGCGATTCAGGGATCCGAGACACTAGCATCTTGGCAAGCAAATTTACTGTTTGAGCCAGTCCTGTTTGAGGGATTGGATGTG
CTTGTGCATCGAGGTATTTACGAGGCTGCAAAAGGAATGTATGAACAGATGTTACCCGAAGTTCGTGCCCATCTAAAATCTCATGGCAGGGGCGCTACCT
TTCGTTTCACAGGGCATTCTCTTGGAGGAAGCTTGTCGCTACTCCTAAATCTCATGCTGAAGATAAGAGGTGAAGTGCCAGCCTCTTCCTTGCTTCCTGT
TATAACATTTGGTGCACCCTCCATCATGTGTGGAGGTGACCGTCTTCTTCGGAAGCTTGGCTTGCCACGTAGCCATGTTCAAGCAATTATGATGCATAGA
GACATTGTGCCTCGAGCCTTCTCTTGCAATTATCCTAATCATGTAGCAGAACTTTTGAAGGCTGTTAATGCAAACTTCCGGAATCATCCTTGTCTCAATA
ACCAGAAACTACTGTACGCTCCAATGGGGGAGCTTCTCATTCTGCAGCCGGATGAGAAATTCTCACCTCACCATCATCTTCTTCCATCAGGTAGTGGTTT
ATATTTTTTGAACTGTCCACCGTCTGACACCAGTGATGCAGAGAAGCAGCTCCGCTCTGCACAGATTGTGTTCTTAAACTCTCCGCATCCTCTTGAGATC
CTAAGAGACCGCTCTGCATATGGTTCTGAAGGAACCATCCAAAGGGATCATGACATGAATTCTTACTTTAAATCTGTCAGGAATGTGATTCGCCAAGAGC
TAAACCGCATCAGAAAAGCCAGGAGACAGCATCGCCGCAAATTCTGGCTTTCCATCGTGGCACCGCATGGCAATGATGCCAGTATCCTTGTAGGTAGGCC
TGTGGGATTTATGAACATGGGCCAAAACCAATTCAACTTCTCAGGGATCTTGCAGACTGGGAGAGAGTCCTTGAAACGGTTCAGTAGGCTCGTTGCATCA
CAACACATGCATTTGCTTGTGGTTCTCATGTGTCCTGCTCGAGTGTTGCTCTTCGGGGCATACAGTACCATCAATTACCATTGA
AA sequence
>Potri.002G197900.1 pacid=42777843 polypeptide=Potri.002G197900.1.p locus=Potri.002G197900 ID=Potri.002G197900.1.v4.1 annot-version=v4.1
MDSICLKTAGIHGIASTISTVSGSQVEARSITNASQLSAVARDKSTAPQKTASPTFSFSLRRPWQSLWSGGGKSTRYNGMASDDAVLVENGVEGESETMG
SSEGENGNWVLKILQVKSLWEDERKGSFDVVNEEVRKEGDAALVNDEEEECDVCRVGDDDDEEEEGEKEIEFDRDSFSSLLRRASLAEAKMYEKMSYLGN
LAYCIPDIKPESLLKRRGLFFVTSSIERREMAMRTEKNHVPPEDEEAESTIAKDELEGNEQENAGNRISASSAYQIAASAASYLHSHTKSILPLKSSKAD
TSEDSYQGGNKTIGPINTMNPDVASFMATTDSMTAVVAAKEEVKQAVADDLSSTRSSPCEWFICDDDRGTRFFAIQGSETLASWQANLLFEPVLFEGLDV
LVHRGIYEAAKGMYEQMLPEVRAHLKSHGRGATFRFTGHSLGGSLSLLLNLMLKIRGEVPASSLLPVITFGAPSIMCGGDRLLRKLGLPRSHVQAIMMHR
DIVPRAFSCNYPNHVAELLKAVNANFRNHPCLNNQKLLYAPMGELLILQPDEKFSPHHHLLPSGSGLYFLNCPPSDTSDAEKQLRSAQIVFLNSPHPLEI
LRDRSAYGSEGTIQRDHDMNSYFKSVRNVIRQELNRIRKARRQHRRKFWLSIVAPHGNDASILVGRPVGFMNMGQNQFNFSGILQTGRESLKRFSRLVAS
QHMHLLVVLMCPARVLLFGAYSTINYH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02660 alpha/beta-Hydrolases superfam... Potri.002G197900
[exp]
0 1
AT2G47180 ATGOLS1 galactinol synthase 1 (.1) Potri.010G150400
[exp]
2.00 0.9511 Pt-GAS1.2
AT1G68765 IDA INFLORESCENCE DEFICIENT IN ABS... Potri.013G074000
[exp]
7.21 0.9304
AT5G23810 AAP7 amino acid permease 7 (.1.2) Potri.001G470000
[exp]
10.95 0.9063
Potri.015G106725
[exp]
14.49 0.9039
Potri.008G026250
[exp]
14.96 0.7620
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.006G048200
[exp]
16.06 0.9040 ZOG1.17
AT1G72510 Protein of unknown function (D... Potri.006G219100
[exp]
20.00 0.8708
AT1G75800 Pathogenesis-related thaumatin... Potri.002G020500
[exp]
23.45 0.8149
AT4G02830 unknown protein Potri.002G053700
[exp]
24.67 0.9130
AT1G54100 ALDH7B4 aldehyde dehydrogenase 7B4 (.1... Potri.001G167100
[exp]
25.45 0.8601 ALDH7.1

Potri.002G197900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.