Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62600 551 / 0 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20560 171 / 3e-50 DNAJ heat shock family protein (.1) AT5G01390 170 / 6e-50 DNAJ heat shock family protein (.1.2.3.4) AT3G08910 169 / 6e-50 DNAJ heat shock family protein (.1) AT5G22060 169 / 7e-49 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT5G25530 160 / 3e-46 DNAJ heat shock family protein (.1) AT1G10350 159 / 7e-46 DNAJ heat shock family protein (.1) AT1G59725 158 / 1e-45 DNAJ heat shock family protein (.1) AT4G28480 155 / 4e-45 DNAJ heat shock family protein (.1.2) AT3G44110 154 / 3e-43 ATJ3 DNAJ homologue 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122600 [exp] 644 / 0 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 174 / 6e-51 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 170 / 3e-49 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 166 / 1e-47 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.017G016100 [exp] 164 / 1e-47 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.002G141100 [exp] 164 / 9e-47 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.011G057601 [exp] 160 / 3e-46 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 158 / 1e-45 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 155 / 2e-44 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014584 [exp] 559 / 0 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 554 / 0 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 553 / 0 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 552 / 0 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 167 / 5e-49 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 167 / 8e-49 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 163 / 3e-47 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 160 / 4e-46 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10041254 [exp] 157 / 4e-45 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 156 / 7e-45 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G198000.1 pacid=42777654 polypeptide=Potri.002G198000.1.p locus=Potri.002G198000 ID=Potri.002G198000.1.v4.1 annot-version=v4.1 ATGGCCAACAAGCTCTTATTCTTATTATGCGTGGTGGCTCTATCACACTACGCTCTCGTAGCCATTGCAGGGAAGAGCTATTACGAAGTGTTGCAAGTGC CGAAAGGCGCGTCGGACGAACAGATCAAAAGAGCGTATAGAAAGCTAGCTTTGAAGTATCATCCTGATAAGAATCAGGGAAATGAAGAGGCTAATTTGCG ATTTGCTGAGATTAGCAATGCGTATGAGGTGTTATCGGATAGTGAGAAGAGGAATATATACGACAGGCATGGTGAAGAGGGACTTAAGCAGCATATGGCT AGTGGAGGCAGAGGAGGAGGAGGAGGAATGAATTTTCAAGACATTTTTAGCCAATTTTTTGGTGGAGGTCAGATGGAAGAGGAAGAGAAAATCGTGAAGG GTGATGATGTAATTGTAGAATTGGATGCAACATTGGAAGACCTGTACATGGGTGGGTCACTGAAGGTTTGGAGGGAAAAAAATGTTATAAAGCCAGCCCC TGGCAAAAGACGCTGTAACTGCAGAAATGAAGTTTACCACAAGCAAATTGGTCCAGGAATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGCCAA AATGTCAAGCATGAAAGGGAGGGATATTTTCTTACAGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTTTATGAAGACGGCGAGCCTA TAATTGATGGAGAGCCTGGAGATTTGAAGTTCCGAATTCGGACAGCACCCCATGACGTCTTCAGAAGAGAAGGCAATGACTTGCATACTACTGTCACCAT AACACTGGTTCAAGCTCTTGTTGGTTTCAAGAAGACCGTTAAACATCTTGATGAACATTTGGTGGACATTAGCTCGAAGGGAATCACTAAACCCAAGGAA GTAAGAAGGTTCAAGGGGGAGGGAATGCCACTGCATTTTAGCACAAAGAACGGTGATCTTTACATCACGTTTGAGGTTCTTTTCCCCGCGTCACTATCTG AAGACCAGAAGACAAAGATCAAGGAAGTTCTTGGCTAG
AA sequence Show only first row Show all	>Potri.002G198000.1 pacid=42777654 polypeptide=Potri.002G198000.1.p locus=Potri.002G198000 ID=Potri.002G198000.1.v4.1 annot-version=v4.1 MANKLLFLLCVVALSHYALVAIAGKSYYEVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNEEANLRFAEISNAYEVLSDSEKRNIYDRHGEEGLKQHMA SGGRGGGGGMNFQDIFSQFFGGGQMEEEEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCQ NVKHEREGYFLTVDIEKGMQDGQEVVFYEDGEPIIDGEPGDLKFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFKKTVKHLDEHLVDISSKGITKPKE VRRFKGEGMPLHFSTKNGDLYITFEVLFPASLSEDQKTKIKEVLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	0	1
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	2.00	0.9046	CNX1.1
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.006G263200 [exp]	2.44	0.8076
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	2.82	0.9025	BIP.1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.016G139100 [exp]	3.46	0.8748
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.008G090700 [exp]	3.60	0.7517
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	5.29	0.8690
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	5.47	0.8645
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G466000 [exp]	7.00	0.7965
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	9.38	0.7876
AT1G69460			emp24/gp25L/p24 family/GOLD fa...		Potri.010G164600 [exp]	10.48	0.7593

Compare expression of checked genes

Potri.002G198000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.