Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47470 530 / 0 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 143 / 9e-39 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 138 / 5e-37 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G21750 97 / 6e-22 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT5G60640 94 / 9e-21 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G77510 92 / 4e-20 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT3G54960 86 / 4e-18 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G07960 73 / 1e-15 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT1G35620 77 / 3e-15 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G43560 69 / 6e-14 ATY2 thioredoxin Y2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122800 [exp] 612 / 0 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 133 / 3e-35 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.009G013600 [exp] 97 / 5e-22 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G082100 [exp] 94 / 5e-21 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 91 / 7e-20 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 82 / 3e-17 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 82 / 3e-17 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.009G004500 [exp] 76 / 1e-16 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.008G040100 [exp] 77 / 3e-15 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010274 [exp] 563 / 0 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 561 / 0 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10020691 [exp] 486 / 6e-173 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10029854 [exp] 380 / 7e-132 AT2G47470 375 / 5e-130 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 137 / 2e-36 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 129 / 2e-33 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 124 / 8e-32 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10018156 [exp] 94 / 1e-20 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 94 / 2e-20 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 93 / 2e-20 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07749 [poplar] [flax] ERp29 Endoplasmic reticulum protein ERp29, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13098 [poplar] [flax] Thioredoxin_2 Thioredoxin-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G198300.2 pacid=42779517 polypeptide=Potri.002G198300.2.p locus=Potri.002G198300 ID=Potri.002G198300.2.v4.1 annot-version=v4.1 ATGGAGAGGTGTAATCAGATCTGGTATGCCTTTGGCACCATGGCTTTGTTAGCCGTTTCAGCCTTAGCAGACGATGTTGTTGTGTTAACAGAAGATAACT TCGAGAAGGAAGTCGGTCAGGACAAAGGCGCTCTCGTTGAGTTCTACGCTCCATGGTGTGGGCACTGTAAAAAGCTAGCTCCTGAATATGAGAAGCTTGG AAGCAGCTTTAAGAAGGCAAAGGCTGTTTTGATCGGAAAGGTGGACTGTGATGAGCATAAAGGTGTATGCAGCAAATATGGGGTCTCTGGATACCCAACT CTTCAATGGTTTCCTAAAGGATCGCTCGAACCTAAAAAGTATGAAGGACCACGAACCGCAGAAGCACTAGCTGAGTTTGTCAATAATGAAGGAGGGTCAA ATGTGAAGATAGCGGCAGTTACATCCAGTGTAGTGGTGCTAACTGCTGATAATTTTAATGATATTGTCTTGGATGAAAACAAAGATGTTTTGGTTGAGTT TTACGCACCCTGGTGTGGCCATTGCAAAAACCTAGCTCCTATTTATGAAAAGGTAGCCACAGCATTTAAATCTGAGGAAGATGTCGTGGTTGCCAATCTA GAGGCTGACAAATATAGGGATCTAGCTGAAAAGTATGGAGTAAGTGGATTCCCTACATTGAAGTTCTTTCCAAAAGGAAACAAAGCCGGGGAAGAGTACG AGGGTGGGAGAGATTTGGATGACTTTGTTGCTTTCATCAATGAAAAGGCTGGAACTAGTCGCGATGGTAAAGGACAACTGACCTCCAAGGCTGGTATAGT TGAAAGTTTGGATGCCTTGGTAAAAGAGTTTGTAGCTGCTGGTGATGATGAGAAGAAAGCAGTCTTTTCCCGAATTGAAGAGGAAGTTGAGAAACTCAAG GGTTCCACAGCAAGGCATGGAAAGATTTATTTGAAGGCGGCCAAGACTTGTATGGTGAAAGGTGCTGGTTATGCCAAGAATGAGATTGAGCGGCTGCAGC GTATGCTTGAAAAGTCAATAAGCCCGGCAAAGGCAGATGAATTCACCCTGAAGAAGAACATTCTATCAACTTTTGCTTGA
AA sequence Show only first row Show all	>Potri.002G198300.2 pacid=42779517 polypeptide=Potri.002G198300.2.p locus=Potri.002G198300 ID=Potri.002G198300.2.v4.1 annot-version=v4.1 MERCNQIWYAFGTMALLAVSALADDVVVLTEDNFEKEVGQDKGALVEFYAPWCGHCKKLAPEYEKLGSSFKKAKAVLIGKVDCDEHKGVCSKYGVSGYPT LQWFPKGSLEPKKYEGPRTAEALAEFVNNEGGSNVKIAAVTSSVVVLTADNFNDIVLDENKDVLVEFYAPWCGHCKNLAPIYEKVATAFKSEEDVVVANL EADKYRDLAEKYGVSGFPTLKFFPKGNKAGEEYEGGRDLDDFVAFINEKAGTSRDGKGQLTSKAGIVESLDALVKEFVAAGDDEKKAVFSRIEEEVEKLK GSTARHGKIYLKAAKTCMVKGAGYAKNEIERLQRMLEKSISPAKADEFTLKKNILSTFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Potri.002G198300 [exp]	0	1
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	3.46	0.9467
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Potri.001G061400 [exp]	5.65	0.9156
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	8.36	0.9407
AT1G76400			Ribophorin I (.1)		Potri.002G006600 [exp]	8.66	0.9242
AT1G34350			unknown protein		Potri.013G114800 [exp]	10.48	0.9207
AT5G15320			unknown protein		Potri.002G024900 [exp]	13.71	0.9250
AT5G14030			translocon-associated protein ...		Potri.017G061900 [exp]	13.96	0.9162
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	14.49	0.9145
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	15.68	0.9232
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	16.70	0.9297

Compare expression of checked genes

Potri.002G198300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.