Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25920 238 / 2e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122900 [exp] 429 / 6e-154 AT2G25920 238 / 3e-78 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001457 [exp] 273 / 7e-92 AT2G25920 227 / 7e-74 unknown protein Lus10002434 [exp] 266 / 5e-89 AT2G25920 225 / 4e-73 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G198400.1 pacid=42777818 polypeptide=Potri.002G198400.1.p locus=Potri.002G198400 ID=Potri.002G198400.1.v4.1 annot-version=v4.1 ATGGGTTCGGATTCGAACGCAGTCCCATCAGCATCAGCTTCAGCATCGACATCGACATCGACATCAACACCATCGACACCAAATGGGAAGCGAAGTAGAG ACCCTGAAGATGAGGTCTACCTTGACAATCTCCATTCTCACAAGCGTTACCTCAGTGAAATAATGGCATCTAGTTTGAATGGATTAACGGTCGGAGACCC ACTCCAGGACAATCTTATGGAATCTCCTGCCAGGTCTGACACCATGTTTTTTGCCAGGGATGAAATGTCCTTGCAATATTCACCAATGTCAGAAGACTTT GATGACTCTAGATTTTGCGAGACCCCTATAAATGCTTGCTCGCCTCAATCTGAAAGTCTACCCGGCAGTCCAGTTTCTCCATATAGGTACCAAAGACCAC TTTGTGGATTCTCTTCTGCTCCTTATAGCAGCTCTTTCTCTTCACATGGATGCAGTGTCACTTCTTCACAGCCTCGTCAACGAGGCTCAGATTCTGAGGG CCGGTTTCCGTCATCACCTAGTGATATATGCCACTCAGCTGACCTGAGGAGGGCTGCTCTCCTGCGTTCTGTGCAGATGAGAACACAACCTACTGGTTCA TCATCCTTTGAATTGCCATTTAGTTCAGGACACGAGCCTGGATCAAACATGGAAGCTGAAGAGCGGCCATGCTCATATATGAAATCCTTGGTTGAAGAGA GGGAGTATCCACTCGAGGAGTGTTCTTCAATGAGCATCTCAGAACCTGAATTTAATGAAGAGAAGGCGTGTCGGGTTTTAAATATGAATATAAAAGGGGA TGACTCTGGAGGTTAA
AA sequence Show only first row Show all	>Potri.002G198400.1 pacid=42777818 polypeptide=Potri.002G198400.1.p locus=Potri.002G198400 ID=Potri.002G198400.1.v4.1 annot-version=v4.1 MGSDSNAVPSASASASTSTSTSTPSTPNGKRSRDPEDEVYLDNLHSHKRYLSEIMASSLNGLTVGDPLQDNLMESPARSDTMFFARDEMSLQYSPMSEDF DDSRFCETPINACSPQSESLPGSPVSPYRYQRPLCGFSSAPYSSSFSSHGCSVTSSQPRQRGSDSEGRFPSSPSDICHSADLRRAALLRSVQMRTQPTGS SSFELPFSSGHEPGSNMEAEERPCSYMKSLVEEREYPLEECSSMSISEPEFNEEKACRVLNMNIKGDDSGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25920			unknown protein		Potri.002G198400 [exp]	0	1
AT4G39870			TLD-domain containing nucleola...		Potri.005G075800 [exp]	1.00	0.8734
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G031000 [exp]	6.63	0.7854
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	10.24	0.7622	ATTDX.2
AT4G13590			Uncharacterized protein family...		Potri.003G174600 [exp]	10.39	0.7842
AT3G62620			sucrose-phosphatase-related (....		Potri.002G198200 [exp]	12.00	0.7513
AT2G23430		ICK1, KRP1	KIP-RELATED PROTEIN 1, Cyclin-...		Potri.007G042300 [exp]	14.69	0.7518
					Potri.003G128400 [exp]	14.86	0.7452
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	15.09	0.7618
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	15.65	0.7554
AT3G15420			Transcription factor TFIIIC, t...		Potri.011G121800 [exp]	17.00	0.7260

Compare expression of checked genes

Potri.002G198400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.