Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26300 986 / 0 EMB1027 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1) AT1G66530 962 / 0 Arginyl-tRNA synthetase, class Ic (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012940 [exp] 977 / 0 AT4G26300 966 / 0.0 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1) Lus10034982 [exp] 820 / 0 AT4G26300 825 / 0.0 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00750 [poplar] [flax] tRNA-synt_1d tRNA synthetases class I (R) CL0039 [poplar] [flax] PF03485 [poplar] [flax] Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain CL0258 [poplar] [flax] DALR PF05746 [poplar] [flax] DALR_1 DALR anticodon binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G198500.1 pacid=42779406 polypeptide=Potri.002G198500.1.p locus=Potri.002G198500 ID=Potri.002G198500.1.v4.1 annot-version=v4.1 ATGATACCCTCCTGCTTAAACCTACAGCTAACTCCACTCTTTCCCTCCCCATTTCTCTCCGTCAATCGACTCTCTCTGCTACCCTCTTCTACTTTCCCTG CCTTTGCTGCGAAATCTAGAAGACTTGCTTTTGCAGCAACAAAGGCGCCATCAATTTCAACCATGGCAGCTGAACAAGGGAATGCTGGAAATTTAAAGCA GAAATTAGCAAAATTATTTCAGTTATCACTTGAAGCAACAGTTCCAGGTGAGCCTGATATCGAACCGCTGGTTGCTGCTTGCACTGCCAAATTTGGGGAC TACCAATGTAATAATGCGATGGGCCTCTGGTCGAAAATCAAAGGCCGCCCAGGAATTGAATTCAGGGGACCCCCAGCAGTTGGACAGGCTATCATGAAAA ATCTTCCTCAGTCTGAAATGATAGAATCATGCTCCGTGGCTGGTCCTGGATTTGTGAATGTTGTGTTGTCTAAAAATTGGATGGCTAAGAACATTCAAAA GATGCTAGTTGACGGTATTGAGACTTGGGCACCAAAACTTTCCATTAAGAGAGCCGTGGTTGACTTTTCCTCACCCAATATTGCTAAAGAAATGCATGTT GGCCATCTGAGGTCGACTATTATTGGTGACACTCTAGCAAGCATGCTTGAATTTTCAAACGTTGAAGTTCTTCGGCGAAACCATGTTGGTGATTGGGGGA CACAGTTTGGTATGTTGATTGAATTCCTCTTTGAAAAATTTCCAAACTTTGAAGATGTTAATGAAACAGCCATTGGTGATTTACAGGCATTCTATAAGGA ATCAAAACAGAGGTTCGATGTTGATGCAGAATTTAAGGATAGGGCACAAAAGGCAGTGGTTCGCCTTCAGAGTGGAGAACAAATGTACCGAAAAGCATGG GCACAGATCTGTGAAATTAGCAGGAGGGAGTTTGATCAGGTCTATCAACGACTTGGAGTTCACCTAGAGGAAAAGGGAGAAAGCTTTTACAATCCATATA TTCCTGGAGTTATTGAAGCACTAACCAATCAAGGATTAGTTGAAGAAAGCAAAGGTGCTCGTGTGATATTTATTGAAGGGATTAACATACCCCTTATTGT GGTGAAGAGTGATGGTGGTTACAATTATGCTTCTACTGATATGACTGCTCTATGGTATCGCCTTACTGAAGAGAAAGCTGAGTGGATTATTTATGTTACT GATGTTGGCCAACAGCAACACTTTGATATGTTTTTCAAAGCTGCCAAACGTGCAGGTTGGCTCCCAGCTGATGATAGGCAGTACCCTAAAGCTAGCCATG TTGGTTTTGGTCTTGTTCTTGGAGAAGATGGGAAACGATTTAGAACTCGCTCTACTGAAGTGGTTCGGTTAGCTGATTTACTTGATGAAGCCAAGACTCG CAGCAAAGCAGCACTTATCGAGCGTGGTAAGGCTGCAGAATGGACTGAAGAGGAGCTTGAGCAAACTGCCGAAGCAGTTGGTTATGGTGCTGTGAAGTAT GCTGACCTGAAGAACAACAGATTGACCAATTACACATTTGATTTTGATCAAATGCTCAACGATAAGGGCAATACTGCTGTTTATTTGTTGTATGCACATG CTCGGATCTGTTCAATTATCAGGAAATCTGGTAAAGACACGGGGGAGCTGAAGAAGACTGGGAAGATAGTGTTGGATCATGCTGATGAACGTGCGCTGGG GCTTCATTTGCTACAATTTGCTGAGGTTGTTGAGGAGGCCTGTACTAACCTACTGCCAAATGTGCTGTGTGAATACCTCTATAATTTATCTGAAAACTAC ACAAGATTTTATTCCAATTGCCAGGTTGTTGGTTCAGCAGAAGAAACTAGTAGACTCTTGTTATGTGAAGCAACGGCTGTGGTGATGAGGAAATGTTTTT TCCTTCTTGGTATTAAACCTGTTTACAAGATATAA
AA sequence Show only first row Show all	>Potri.002G198500.1 pacid=42779406 polypeptide=Potri.002G198500.1.p locus=Potri.002G198500 ID=Potri.002G198500.1.v4.1 annot-version=v4.1 MIPSCLNLQLTPLFPSPFLSVNRLSLLPSSTFPAFAAKSRRLAFAATKAPSISTMAAEQGNAGNLKQKLAKLFQLSLEATVPGEPDIEPLVAACTAKFGD YQCNNAMGLWSKIKGRPGIEFRGPPAVGQAIMKNLPQSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLSIKRAVVDFSSPNIAKEMHV GHLRSTIIGDTLASMLEFSNVEVLRRNHVGDWGTQFGMLIEFLFEKFPNFEDVNETAIGDLQAFYKESKQRFDVDAEFKDRAQKAVVRLQSGEQMYRKAW AQICEISRREFDQVYQRLGVHLEEKGESFYNPYIPGVIEALTNQGLVEESKGARVIFIEGINIPLIVVKSDGGYNYASTDMTALWYRLTEEKAEWIIYVT DVGQQQHFDMFFKAAKRAGWLPADDRQYPKASHVGFGLVLGEDGKRFRTRSTEVVRLADLLDEAKTRSKAALIERGKAAEWTEEELEQTAEAVGYGAVKY ADLKNNRLTNYTFDFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDTGELKKTGKIVLDHADERALGLHLLQFAEVVEEACTNLLPNVLCEYLYNLSENY TRFYSNCQVVGSAEETSRLLLCEATAVVMRKCFFLLGIKPVYKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Potri.002G198500 [exp]	0	1
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Potri.008G171600 [exp]	1.00	0.8962
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	2.00	0.8021
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	2.82	0.8397
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	4.47	0.8015
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	4.58	0.8158
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	5.47	0.7913
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	7.00	0.7871
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.015G003300 [exp]	10.19	0.7696
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.017G099200 [exp]	11.61	0.7677
AT5G51120		PABN1, ATPABN1	polyadenylate-binding protein ...		Potri.015G110800 [exp]	12.12	0.7494

Compare expression of checked genes

Potri.002G198500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.