Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55010 525 / 0 EMB2818, ATPURM, PUR5 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G123000 [exp] 648 / 0 AT3G55010 520 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009823 [exp] 551 / 0 AT3G55010 522 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10040931 [exp] 550 / 0 AT3G55010 532 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10039497 [exp] 514 / 0 AT3G55010 489 / 4e-175 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10024142 [exp] 463 / 2e-160 AT3G55010 439 / 3e-151 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00586 [poplar] [flax] AIRS AIR synthase related protein, N-terminal domain PF02769 [poplar] [flax] AIRS_C AIR synthase related protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G198600.3 pacid=42780175 polypeptide=Potri.002G198600.3.p locus=Potri.002G198600 ID=Potri.002G198600.3.v4.1 annot-version=v4.1 ATGGCTACTACTAGCATAGCATCAAACACTGAGCTATCGCGTGCGATTGCAGCTTCAATTAGACCCTCTTCTAATAAACCCTTGGCCACTCAACAACCCA AAGGAAGATGCACATTTAATCGCTTTTCCGATAGATTTCCGCTTCTTTCAGTGAGAGCTACAAGCAATAGTTCGATGTCCAAGGAAAATAGCAGCAAAAG CGGTGATGGGGCTGGTGGAGGACTTACATACAAGGATGCTGGGGTGGATATAGATGCTGGGTCTGAGCTTGTTCGGCGAATTGCAAAGATGGCTCCTGGG ATTGGTGGTTTTGGTGGTCTTTTCCCTCTTGGGGATTCGTACCTAGTTGCAGGTACGGATGGTGTAGGGACTAAGCTAAAGCTTGCATTTGAAACTGGAA TCCATGAAACCATTGGAATTGATCTGGTTGCTATGAGTGTAAACGATATTGTTACTTCCGGTGCAAAGCCCTTGTTTTTTCTTGATTACTATGCTACAAG CCGCCTTGATGTTGACCTTGCTGAAAAGGTCATTAAAGGCATAGTTGATGGTTGTCAACAATCGGACTGCACTCTTTTAGGGGGAGAGACTGCAGAGATG CCAGGTTTCTATGCAGAAGGTGAGTATGACCTTAGCGGGTTTGCTGTTGGCATTGTAAAAAAGGAATCAGTGATTGATGGGAAAAACATTGCGGCCGGGG ATGTTCTCATTGGTTTGCCATCGAGTGGAGTCCATTCCAATGGTTTCTCTCTTGTAAGAAGGGTTCTAGCTCAGAGTGGCTTGTCTTTGAATGACCAACT TCCTGGTGGAAGTGTTACTTTGGGTGAAGCTCTTATGGCTCCAACTTCTATCTATGTCAAGCAGGTGCTTGATTTGATTAGCAAGGGCGGTGTAAAGGGC ATAGCTCACATCACTGGAGGCGGTTTTACAGATAACATACCAAGAGTTTTCCCGAAAGGCCTTGGAGCTTTTATATACAAGGATTCATGGGAAGTCCCAA CCCTTTTCAAATGGATCCAAGAGGCTGGAAGAATAGAAGATGCTGAGATGAGTCGGACTTTTAACATGGGCATTGGGATGGTTCTGGTCATGACCGAGGA AGCATCTCGCAGAATTCTTGAGGAGGGACAACATAAGGCATATCGCATTGGTGAGGTTGTACATGGTGAAGGAGTGAGCTATCACTAA
AA sequence Show only first row Show all	>Potri.002G198600.3 pacid=42780175 polypeptide=Potri.002G198600.3.p locus=Potri.002G198600 ID=Potri.002G198600.3.v4.1 annot-version=v4.1 MATTSIASNTELSRAIAASIRPSSNKPLATQQPKGRCTFNRFSDRFPLLSVRATSNSSMSKENSSKSGDGAGGGLTYKDAGVDIDAGSELVRRIAKMAPG IGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHETIGIDLVAMSVNDIVTSGAKPLFFLDYYATSRLDVDLAEKVIKGIVDGCQQSDCTLLGGETAEM PGFYAEGEYDLSGFAVGIVKKESVIDGKNIAAGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLNDQLPGGSVTLGEALMAPTSIYVKQVLDLISKGGVKG IAHITGGGFTDNIPRVFPKGLGAFIYKDSWEVPTLFKWIQEAGRIEDAEMSRTFNMGIGMVLVMTEEASRRILEEGQHKAYRIGEVVHGEGVSYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	0	1
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	3.87	0.9040
AT3G49890			unknown protein		Potri.001G172500 [exp]	4.47	0.8812
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	5.19	0.8890	Pt-RPL21.5
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	6.63	0.8918
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119500 [exp]	11.31	0.7947
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	11.31	0.8494
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	11.48	0.8753	ARP901,ARP4.2
AT5G24650			Mitochondrial import inner mem...		Potri.012G004600 [exp]	12.48	0.8158
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	12.72	0.8489	Pt-TUFA.3
AT4G32430			Pentatricopeptide repeat (PPR)...		Potri.017G042100 [exp]	13.22	0.8184

Compare expression of checked genes

Potri.002G198600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.