Plant FIBer expression Database

Potri.002G198700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26400 50 / 2e-06 EIF4B1 eukaryotic translation initiation factor 4B1 (.1)
AT1G13020 49 / 2e-06 EIF4B2 eukaryotic initiation factor 4B2 (.1)
AT4G38710 43 / 0.0002 glycine-rich protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G123100
[exp]
394 / 7e-138 AT3G26400 55 / 3e-08 eukaryotic translation initiation factor 4B1 (.1)
Potri.008G185400
[exp]
46 / 2e-05 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1)
Potri.010G048200
[exp]
46 / 3e-05 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1)
Potri.004G169100
[exp]
42 / 0.0003 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006224
[exp]
52 / 4e-07 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10036874
[exp]
50 / 2e-06 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1)
Lus10006469
[exp]
49 / 2e-06 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1)
Lus10011412
[exp]
49 / 2e-06 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1)
Lus10012166
[exp]
45 / 6e-05 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06273 eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence
>Potri.002G198700.2 pacid=42778628 polypeptide=Potri.002G198700.2.p locus=Potri.002G198700 ID=Potri.002G198700.2.v4.1 annot-version=v4.1
ATGGCGGATAGCAGGATAAAAAATGTCTCTGCAGCGTTTTCGTGGGCAGATGAGGTAGAGAGAGAAGAGGAAGAACAAGCTCGATTTCAGGAGCACCAGA
AGCAGAAGCCAGACCCTTTTGGCTCTGCCAGGCCCAGAGAAGTTGTTCTCCTGGAAAAGGGAATTGATTGGAGAAAACTCGACATCCATCTTCAACAACC
TTCTCACAAAAGGCAGCTGGATCCTCCTTATGGGAAGCAATGCAAGGAAAACATCCCTGCCTTTGCTGCTCCAGGCATCGACAGGATACCTTCAGTTACC
CCAAGCAAGAGCCTAAAAACTGAACTGGAAGATGCAAATTCGGAGCTGAAAAGAAGCGAAATTTTGCGGGTTCCTTTGGCTACAGAGAGCCAGATTCCTG
CAACATTCGTACCTCCTCTAAGATATCCACCTAAAAATGTCATTCCTAGTTTGTCCGAGTCTGGCTTTCATTATTATCTACAGGAATTAGACAAAGGGCA
GCAAGGTTTTCAAAGCAAGCTGCCCCTAAAGCCTGGGAAAGAGAATACATTTCATCAGCAAGTGCCACAGAGGGATCGCAGCTTTCAGAACTTGAATCAG
GGAAGCCACACTCACCCTCACTATCATCGACAAATATTGCAAGCTGAGCAAAGGAGCCAGATGGAGGATAAAATAAGTTTCAGACTGTGGCAATCGGATG
GTAGTGGCAAGAACTTGAGGAAACCAGCAGCTAGTAGATTACAGCAAGATTCAGATTCGGCTACTGAGAACCCTGGCAAAAACCTTCAAGGAAATGATGC
TGTTAGGCAGGGGGGTAGGCAGATTTTGACAAAATCCTCTTGTGCTGGAGGTACAAACAACATCAAACAGAAGAATGGCGTGGAAAGATCCGTTGCTAAT
AGATCAAGCGGAACAAAATTCAATGTAATGGTGCAGGTAAGAAAAAGGCGGGGGAACTAA
AA sequence
>Potri.002G198700.2 pacid=42778628 polypeptide=Potri.002G198700.2.p locus=Potri.002G198700 ID=Potri.002G198700.2.v4.1 annot-version=v4.1
MADSRIKNVSAAFSWADEVEREEEEQARFQEHQKQKPDPFGSARPREVVLLEKGIDWRKLDIHLQQPSHKRQLDPPYGKQCKENIPAFAAPGIDRIPSVT
PSKSLKTELEDANSELKRSEILRVPLATESQIPATFVPPLRYPPKNVIPSLSESGFHYYLQELDKGQQGFQSKLPLKPGKENTFHQQVPQRDRSFQNLNQ
GSHTHPHYHRQILQAEQRSQMEDKISFRLWQSDGSGKNLRKPAASRLQQDSDSATENPGKNLQGNDAVRQGGRQILTKSSCAGGTNNIKQKNGVERSVAN
RSSGTKFNVMVQVRKRRGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.002G198700
[exp]
0 1
AT1G68350 unknown protein Potri.008G122700
[exp]
1.00 0.9521
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.014G123100
[exp]
2.00 0.9439
AT4G12540 unknown protein Potri.005G053300
[exp]
2.82 0.9386
AT4G12540 unknown protein Potri.013G040800
[exp]
3.46 0.9395
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.002G119600
[exp]
5.91 0.9288
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.019G128500
[exp]
6.78 0.8837
AT5G42700 B3 AP2/B3-like transcriptional fa... Potri.014G031600
[exp]
10.48 0.8954
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Potri.018G063600
[exp]
11.48 0.8945 TIF3.1
AT2G19740 Ribosomal protein L31e family ... Potri.001G269600
[exp]
15.87 0.9245
AT2G05840 PAA2 20S proteasome subunit PAA2 (.... Potri.006G140400
[exp]
16.24 0.8840

Potri.002G198700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.