Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38700 158 / 2e-49 unknown protein AT4G02170 138 / 1e-41 unknown protein AT4G26130 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G123400 [exp] 278 / 8e-97 AT5G38700 144 / 4e-44 unknown protein Potri.014G139900 [exp] 47 / 2e-06 AT1G52140 87 / 3e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010019 [exp] 176 / 2e-56 AT5G38700 164 / 8e-52 unknown protein Lus10025041 [exp] 161 / 9e-51 AT5G38700 150 / 2e-46 unknown protein Lus10001456 [exp] 123 / 1e-35 AT5G38700 132 / 4e-39 unknown protein Lus10002433 [exp] 49 / 5e-08 AT5G38700 69 / 7e-16 unknown protein Lus10028472 [exp] 40 / 0.0003 AT5G57510 87 / 1e-22 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.002G198800.1 pacid=42778936 polypeptide=Potri.002G198800.1.p locus=Potri.002G198800 ID=Potri.002G198800.1.v4.1 annot-version=v4.1 ATGCCGAAGAAAAATGGCAATGATGTTGCTCATAGAGCATGGAACATCCTGCGCCTAGCATTGTTGTGGGCAAGAAAAGGTGGTGTTTTCAAGAGGCGTT TGATAATGGATCATCTACGAGTTGTGCGTAAGTTTCTTAAAAGCCTGGGACAACATACTTCTCGCAGGCGCCAGCTATATTATGGAGAGCACGAACTCTC TTTCGACAAGACCCCCATTTTCCACGTCAAGATGCATCGCCCAGCCTCCATGCGATTCAACATCCCTTGCATAACCCCACAGGTTGACTTTGACTACGAT TTTGATGGTGAAGTTTGCGAAGATGATATTCAGCAAGATGGATCAGTTTATGAGTGCTATGATGGAATGAGGAGGAGTTTCTTATTAAAAGGTGGAGATG AAGAAGAATACGAAACTTGTGAAGAGAAAATTCCAGCAGAGGAAGAAGGGATTGATATGAGAGCGGAGGAGTTCATAGCTACGTTCCGCCAGCAAATGAG GCTTCAAAGACAGATCTCGTATCTACAGTACCATGAAACACCCAAAAAAGGAACAAGCGGATGA
AA sequence Show only first row Show all	>Potri.002G198800.1 pacid=42778936 polypeptide=Potri.002G198800.1.p locus=Potri.002G198800 ID=Potri.002G198800.1.v4.1 annot-version=v4.1 MPKKNGNDVAHRAWNILRLALLWARKGGVFKRRLIMDHLRVVRKFLKSLGQHTSRRRQLYYGEHELSFDKTPIFHVKMHRPASMRFNIPCITPQVDFDYD FDGEVCEDDIQQDGSVYECYDGMRRSFLLKGGDEEEYETCEEKIPAEEEGIDMRAEEFIATFRQQMRLQRQISYLQYHETPKKGTSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38700			unknown protein		Potri.002G198800 [exp]	0	1
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.005G007200 [exp]	1.00	0.9007	EXT.9
AT5G38700			unknown protein		Potri.014G123400 [exp]	1.41	0.8927
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.002G060500 [exp]	3.87	0.8497	Pt-EXT.12
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	5.29	0.8467	Pt-XTH3.1
AT1G72790			hydroxyproline-rich glycoprote...		Potri.001G198900 [exp]	7.07	0.7692
AT3G06890			unknown protein		Potri.010G013100 [exp]	8.36	0.7603
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	8.48	0.7769
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	8.66	0.8062	ATSEB1.1
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	9.16	0.7927	AXS1.2
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.002G060400 [exp]	9.38	0.7899

Compare expression of checked genes

Potri.002G198800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.