Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06720 858 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 826 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT1G02690 795 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 789 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT1G09270 757 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT5G49310 639 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 592 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 422 / 3e-144 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 166 / 2e-48 ARM repeat superfamily protein (.1) AT5G03070 168 / 1e-45 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G124200 [exp] 1010 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 908 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G010900 [exp] 904 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 894 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.008G214100 [exp] 894 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G007300 [exp] 796 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 177 / 6e-49 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.009G029600 [exp] 62 / 6e-10 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 62 / 9e-10 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010028 [exp] 887 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 887 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 880 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 877 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 852 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 825 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036452 [exp] 781 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 691 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 190 / 8e-54 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 186 / 2e-52 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0020 [poplar] [flax] TPR PF01749 [poplar] [flax] IBB Importin beta binding domain CL0020 [poplar] [flax] TPR PF16186 [poplar] [flax] Arm_3 Atypical Arm repeat
Representative CDS sequence Show only first row Show all	>Potri.002G199600.1 pacid=42778664 polypeptide=Potri.002G199600.1.p locus=Potri.002G199600 ID=Potri.002G199600.1.v4.1 annot-version=v4.1 ATGTCGTTGAGGCCGAACGCGAGAGTGGAGGTGAGGAGGAACAGGTACAAGGTGGCGGTGGATGCAGATGAAGGGAGGAGGAGGAGGGAGGACAACATGG TGGAGATCCGAAAGAGTAAGAGAGAAGAAAGCTTGCTTAAGAAGCGACGTGGGGGACTTCAGGCCCAACAACGTCAACAACAACAACAACAAGTCATCTC CTCTCTTAACATTTCTTCCGCTTCTGATAAGCCGTTAGATACTCTTCCGGCAATGATTGCTGGTGTTTGGTCAGAGGACAAGAATTCGCAACTTGAGGGA ACTACTCATTTCCGAAAGCTGCTCTCGATAGAACGCTGTCCTCCGATCAATGAAGTTATACAATCAGGGGTTGTCCCCCGCTTCGTTGAGTTTCTTGCAA GGGATGATTTTCCACAGCTTCAGTTTGAGGCGGCGTGGGCACTCACGAATATCGCTTCTGGGACATCAGAAAACACCAGGGTTGTAATTGACCATGGGGC AATCCCAATTTTTGTCAAACTCTTAAGTTCTCCAGCTGATGATGTCAGGGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGTGACTCATCAAAATGC CGTGATCTGGTCCTTGGCCATGGGGCTTTGATGCCTTTGCTTGCGCAATTCAATGAACAAGCAAAGCATTCATTGTTAAGAAATGCAACCTGGACATTAT CAAACTTCTGCAGGGGCAAGCCCCAACCTTTATTCGACCAGACAAAACCTGCCCTCCCAGCTCTAGAGCGTCTCATACATTCAAATGATGAGGAAGTCCT CACAGATGCATGCTGGGCTCTGTCGTATCTCTCCGATGGATCCAATGAAAAAATCCAAGCTGTTATCGAGGCTGGTGTCTGCCCCCGACTTGTTGAGCTT TTACTTCATCCATCTCCGACAGTGCTCATCCCTGCTCTACGTACAGTTGGAAATATTGTTACTGGAGATGACATGCAGACTCAGTGTATGATAAACCATC AAGCTCTCCCATGCCTTTTGAACTTACTGACAAATAATTACAAGAAGAGCATCAAGAAGGAAGCATGCTGGACAATCTCAAACGTCACAGCTGGAAATGT AAATCAGATACAGGCGGTACTTGAAGCAGGTATTATTGGTCCTCTTGTCCAATTGCTTCAAAATGCTGAATTTGAGATCAAGAAAGAAGCTGCTTGGGCA ATTTCAAATGCATCATCGGGTGGAAGCCATGAACAAATCAAGTTTCTGGTGAACCAGGGATGCATCAAGCCATTATGTGATCTTTTGATTTGTCCCGACC CTAGAATTGTCACAGTTTGTTTAGATGGTCTAGAGAACATTCTAAAGGTTGGGGAAGCTGAAAAGAATTTGGGCAGCACAGGAAATGCAAATCTGTACAC CCAAATGATTGAAGATGTTGAGGGTTTAGAAAAGATTGAGAACCTTCAGAGTCATGACAACAATGAAATATATGAGAAAGCAGTGAAGATTTTGGAGACG TATTGTGTGGAGGATGGTGATGACTTTGAGGCATTTCCTTCTGGTGATGCTTCCCAATCTGGATTTCAGTTTGGTGGGACCGGAGTTCCTGTTCCTTCTA ACGGTTTTAATTTCAGTTAA
AA sequence Show only first row Show all	>Potri.002G199600.1 pacid=42778664 polypeptide=Potri.002G199600.1.p locus=Potri.002G199600 ID=Potri.002G199600.1.v4.1 annot-version=v4.1 MSLRPNARVEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRRGGLQAQQRQQQQQQVISSLNISSASDKPLDTLPAMIAGVWSEDKNSQLEG TTHFRKLLSIERCPPINEVIQSGVVPRFVEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPADDVREQAVWALGNVAGDSSKC RDLVLGHGALMPLLAQFNEQAKHSLLRNATWTLSNFCRGKPQPLFDQTKPALPALERLIHSNDEEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVEL LLHPSPTVLIPALRTVGNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISNVTAGNVNQIQAVLEAGIIGPLVQLLQNAEFEIKKEAAWA ISNASSGGSHEQIKFLVNQGCIKPLCDLLICPDPRIVTVCLDGLENILKVGEAEKNLGSTGNANLYTQMIEDVEGLEKIENLQSHDNNEIYEKAVKILET YCVEDGDDFEAFPSGDASQSGFQFGGTGVPVPSNGFNFS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	0	1
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	3.00	0.8763
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	4.58	0.8342
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	5.29	0.8682
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	7.48	0.8564
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.019G031000 [exp]	7.93	0.8676	Pt-APY1.4
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	14.42	0.8096	APGM.2
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.015G132400 [exp]	14.45	0.8259
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	14.96	0.7945
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	17.88	0.8560
AT2G27090			Protein of unknown function (D...		Potri.004G197700 [exp]	18.49	0.7869

Compare expression of checked genes

Potri.002G199600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.