Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62660 592 / 0 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 556 / 0 GATL5 galacturonosyltransferase 5 (.1.2) AT4G02130 554 / 0 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G70090 447 / 3e-157 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 426 / 4e-149 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 408 / 3e-142 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 404 / 6e-141 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 399 / 7e-139 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 387 / 1e-134 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 383 / 2e-132 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125000 [exp] 671 / 0 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G038300 [exp] 443 / 9e-156 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G129400 [exp] 412 / 5e-144 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G192600 [exp] 410 / 4e-143 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 408 / 1e-142 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.014G040300 [exp] 403 / 2e-140 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 402 / 4e-140 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G018100 [exp] 400 / 2e-139 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.007G031700 [exp] 396 / 8e-138 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002440 [exp] 612 / 0 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10010025 [exp] 576 / 0 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10029215 [exp] 433 / 6e-152 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 431 / 5e-151 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10010727 [exp] 429 / 1e-150 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 428 / 5e-149 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10000262 [exp] 424 / 9e-149 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1) Lus10034012 [exp] 417 / 5e-146 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 415 / 2e-145 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10016301 [exp] 402 / 4e-140 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.002G200200.1 pacid=42777506 polypeptide=Potri.002G200200.1.p locus=Potri.002G200200 ID=Potri.002G200200.1.v4.1 annot-version=v4.1 ATGCTTTGGATTCTACGATTTTCGGGCTTCTTCTCTGCCGCTCTTGTCATGATTATACTCTCTCCGTCTTTCCAATCCTTCCCTCCAGCTGAAGCCATTC ACTCCTCCAATCTCGACGGTCATCTCCGTTTCCCCCTTCTCCTCTCCCCTGCCGATTCCCTCACCCAACTATCCTTCCGAAAATCGACTATATTCCGCAA TGCTGATGAATGCGGCTTCTCCGACCACCAAAGCAGAGGCAAAACAAGTGTCTGTTATCCTTCATTGGTCCACGTAGCGATTACTCTCGACGTGGAGTAT CTTCGTGGCTCAGTTGCTGCTGTTCACTCAATTCTGCAGCACTCAATGTGTCCGGAGAATGTGTTCTTCCATTTTTTAGTATCTGAGACCAATCTGGAAT CCCTGGTTCGATCCACTTTCCCTCAATTGAAGTTCAAAGTTTATTATTTCGATCCGGAGATTGTTCGCAGCCTCATTTCCACCTCAGTTAGGCAAGCGCT GGAGCAGCCACTCAATTACGCTAGGAATTATCTGGCTGATTTGCTTGAGCCATGTGTTAAAAGAGTGATTTATTTGGACTCTGATCTAGTTGTCGTTGAT GATATTGCAAAGTTGTGGACTACTAATTTGGGTTCTAGAATAATCGGAGCTCCGGAATATTGCCACGCCAACTTCACCAAGTATTTCACGGCGGATTTCT GGTCCGACAAGCGGTTTTCAGGGACATTTCGGGGGCGGAAACCCTGTTACTTTAACACTGGAGTGATGGTGATAGATCTGGTGAAATGGAGATGGGCCGG GTACACGAAGCGGATTGAGAGGTGGATGGAGATCCAGAAGAGTCACCGGATTTATGAGCTGGGTTCGTTGCCGTCGTATCTTTTGGTGTTTGCGGGACAC GTGGCGCCGATTGAGCACCGGTGGAACCAACATGGGTTAGGTGGTGATAATGTGAGAGGGAGTTGCCGGGACTTGCATCCGGGTCCGGTTAGTCTATTGC ATTGGTCAGGTAGTGGAAAGCCGTGGCTCAGGCTCGACTCAAAGCAACCGTGCCCTCTTGATGCACTGTGGGCACCATACGATTTGTACGGACGCCCACC TTGA
AA sequence Show only first row Show all	>Potri.002G200200.1 pacid=42777506 polypeptide=Potri.002G200200.1.p locus=Potri.002G200200 ID=Potri.002G200200.1.v4.1 annot-version=v4.1 MLWILRFSGFFSAALVMIILSPSFQSFPPAEAIHSSNLDGHLRFPLLLSPADSLTQLSFRKSTIFRNADECGFSDHQSRGKTSVCYPSLVHVAITLDVEY LRGSVAAVHSILQHSMCPENVFFHFLVSETNLESLVRSTFPQLKFKVYYFDPEIVRSLISTSVRQALEQPLNYARNYLADLLEPCVKRVIYLDSDLVVVD DIAKLWTTNLGSRIIGAPEYCHANFTKYFTADFWSDKRFSGTFRGRKPCYFNTGVMVIDLVKWRWAGYTKRIERWMEIQKSHRIYELGSLPSYLLVFAGH VAPIEHRWNQHGLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWLRLDSKQPCPLDALWAPYDLYGRPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	0	1
AT3G53260		PAL2, ATPAL2	phenylalanine ammonia-lyase 2 ...		Potri.010G224100 [exp]	2.82	0.8213	PAL.3
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	4.47	0.7887
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	6.48	0.7640
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	7.93	0.7951
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	8.36	0.8156
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	11.48	0.8135
AT1G51630			O-fucosyltransferase family pr...		Potri.008G008300 [exp]	14.14	0.7536
					Potri.012G034400 [exp]	14.42	0.7787
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	18.54	0.8131
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	19.79	0.7940

Compare expression of checked genes

Potri.002G200200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.