Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCSLD5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02730 1814 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT3G03050 1437 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1394 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1335 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT2G33100 1243 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1127 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 821 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G09870 815 / 0 CESA5 cellulose synthase 5 (.1) AT5G64740 812 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT5G17420 808 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125100 [exp] 2009 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.019G049700 [exp] 1454 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1445 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1345 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1334 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1327 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.003G097100 [exp] 1315 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G050200 [exp] 1219 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.003G177800 [exp] 1214 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010024 [exp] 1783 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10025046 [exp] 1565 / 0 AT1G02730 1540 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10009248 [exp] 1417 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1347 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1319 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10038008 [exp] 1314 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10022982 [exp] 1298 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1241 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10002134 [exp] 1236 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1196 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.002G200300.1 pacid=42777296 polypeptide=Potri.002G200300.1.p locus=Potri.002G200300 ID=Potri.002G200300.1.v4.1 annot-version=v4.1 ATGGTGAAAAGGGCTGGTTCTCCATGTTCATCTCCAGTGACCATAACTGTCTCATCAGGATGCAAAGGAGGAGGAAGTAGAAGCATGGGCTTAACAAGTC CAGTACCAAGAACTTCCATTTCAAACAACCCAAACTCCCCTCTTAGCAACAATAGAAATAGAACATCTAGTGGAGGCAGATACTGTTCAACGTCCAGAGA CGATGCCACGGAGGAAAACAATTCAGAGTTCGTCTCGTACACTGTCCATATACCGCCCACTCCAGATCACCAGATCTTTTCAGCCTCACAGTCAAGCCTA GCTGAAGACATAAAAAATGCTAGCAAACCTGATAGGAGTTTCATTTCTGGTACTATTTTCACTGGTGGGTTCAATTCTGTTACACGTGGGCATGTTATTG ATTGCTCGGTAGAAAACAACGAGTCCCTGAAATCTGGGCTTGTTTGTGGCATGAAAGGTTGTGACGAAAAAGCAATTAAGGGAAAATGTGAGTGTGGGTT CAAGATTTGTAGAGATTGTTATTTAGACTGTGTGGGGTCTAATGGAGGAGGTCATTGTTCTGGTTGCAAGGAACCATACAAGGATGTTGATGATGAGGGG GAGGATGACGATGACGATGATTATGCTTATGATGAAGCTAAAAGTGAAGCAGACGATCAGGCACTGCCGTTGCCTAAATTGGATAAGAGGCTTTCACTTG TGAAGTCGTTTAAGGCCCAGAATCATCCACCTGATTTTGATCATACCAGGTGGTTGTTTGAGACGAAGGGGACTTATGGTTATGGAAATGCTGTGTGGCC TAAAGATGGGTATGGTGTTGGGTCAGGTGGTAATGGGTTTGAGCAACCTCCAGAGTTTGGAGAGAGAAGTAGGAGGCCTTTGACCAGGAAGGTTAAGGTT TCCGCAGCAATCCTCAGCCCTTACAGGCTACTCATCGTGATACGTCTTGTGGCTCTTGGGCTTTTCCTTGCATGGAGAATCCGACACCCTAATCGTGAAG CTATGTGGTTATGGGGGATGTCCATAACTTGTGAGGTATGGTTTGCACTGTCGTGGATTCTTGATCAGCTCCCTAAGCTCTGCCCTGTACACAGAGTGAC TGACCTCTCTGTGCTGAAAGAGCGGTTTGAATCCCCCAATCTTCGAAACCCGAAAGGTCGATCAGACCTCCCAGGCACTGATGTATTTGTTTCCACGGCA GACCCTGAAAAGGAACCTCCTTTGGTCACCGCAAACACCATCCTTTCAATACTTGCGGTTGATTATCCAGTGGAAAAGGTAGCTTGTTACTTATCGGATG ATGGTGGATCCCTCTTGACGTTTGAAGCTCTGGCTGAGACAGCCAACTTTGCAAGAATTTGGGTACCTTTCTGTAGGAAACACAATTTAGAACCCAGGAA CCCTGAGGCCTATTTCGGGCAGAAGCGTGATTTTCTCAAGAACAAAGTGAGACTTGATTTTGTTAGAGAGAGGAGAAGAGTAAAGCGAGAATATGATGAA TTTAAGGTGAGGATCAATTCACTGCCTGAATCAATTAGGAGAAGATCAGATGCATATAATGCCCATGAAGAGCTTCGAGCTAGGAAAAAACAGATGGAAA TGGGGGGAAATCCATCAGAAACTGTGAAGGTGCCCAAGGCTACCTGGATGTCAGATGGTTCTCATTGGCCGGGGACTTGGGCTTCTGGAGAAGCAGACCA CTCAAGAGGAGACCATGCTGGAATAATCCAGGCTATGCTAGCTCCACCAAATGCAGAACCTGTTTTTGGTGTAGAAGCAGATGGTGAGAGCTTGATTGAC ACCACAGAAATTGATATTAGATTACCAATGCTGGTCTATGTGTCTCGCGAAAAAAGGCCAGGCTATGATCACAATAAGAAAGCGGGGGCAATGAATGCTC TAGTTAGAACCAGTGCAATCATGTCAAATGGTCCCTTCATTCTGAATCTGGATTGTGATCACTACATCTCTAACTCTCTGGCTTTGAGAGAAGGGATGTG CTTTATGCTTGATAGGGGTGGTGATAGGATCTGTTATGTTCAGTTCCCACAAAGGTTTGATGGGATTGATCCAAGTGATCGGTATGCAAACCACAATACA ATATTCTTTGATGTAAGCATGAGAGCTCTTGATGGGCTACAGGGTCCGATGTATGTTGGGACAGGCTGTATTTTCCGCAGAACAGCTCTTTATGGGTTTA GTCCTCCTAGAACCACAGAGCACCATGGGTGGTTTGGTAGGAGGAAAATCAAATTGTTCTTGAGGAAACCCAAGGCAGCAAAGAAGCAAGAGGATGAGAT AGCTTTGCCAATCAATGGGGATCACGGCGATATTGATGATGTAGATATTGAGTCTTTGCTTCTTCTACCTATAAGGTTTGGGAACTCTACTTCTCTAGCT GCATCTATCCCAGTTGCAGAATACCAGGGAAGGCTGCTTCAAGATTTGCAAGGAAAAGGTAACCACGGAAGACCAGCCGGTTCCCTTGCGGTGCCTCGTG AGCCTTTAGATGCTGCAACTGTTGCAGAGGCAATCAGTGTCATCTCTTGTTTCTACGAGGATAAAACTGAGTGGGGAAAGAGAGTAGGATGGATATATGG TTCGGTGACAGAAGATGTGGTGACTGGTTATCGTATGCACAACAGAGGATGGAGGTCTGTCTATTGTGTAACCAAAAGGGATGCATTTCGAGGAACAGCG CCAATTAATCTAACAGACAGGCTTCACCAAGTCCTTCGATGGGCAACAGGCTCAGTGGAAATCTTCTTTTCACGGAACAATGCACTATTCGCTACTCGCC GGATGAAATTCTTACAAAGGGTTGCATATTTCAACTGCGGAATGTACCCATTCACATCCATGTTTCTCATAGTTTATTGCGTCCTACCTGCAATCTCTCT TTTTTCCGGCCAGTTCATAGTCCAATCACTCAGTGTGACCTTTCTAGTTCTCTTGTTGGTGATCACTATCACCCTATGCTTGCTTGCAATTCTAGAAATC AAATGGTCAGGAATCACACTTAATGATTGGTGGCGAAATGAACAGTTTTGGTTGATTGGGGGGACAAGTGCCCATCCTGCAGCAGTTTTACAAGGACTAC TGAAGGTTATAGCAGGAGTTGACATCTCATTCACTTTGACATCTAAATCTGCCACGCCTGAAGATGGAGATGATGGATTTGCTGACTTGTATGTGGTTAA GTGGAGCTTCTTAATGGTCCCTCCTATTACAATAATGATTCTGAACCTGATTGCAATTGCAGTAGGAGTTGCCAGAACTATGTACAGCCCATTTCCACAG TGGAGCACGCTCCTTGGAGGAGTGTTCTTCAGCTTCTGGGTTCTGTCCCATCTTTACCCCTTTGCCAAAGGCTTGATGGGAAGGAGGGGAAGGGTCCCAA CCATTGTCTATGTGTGGTCTGGACTACTCTCCATCATCATTTCTTTGCTGTGGGTGTACATAAGTCCTCCTAATGTAGTTTCATTACTGGCTACATGA
AA sequence Show only first row Show all	>Potri.002G200300.1 pacid=42777296 polypeptide=Potri.002G200300.1.p locus=Potri.002G200300 ID=Potri.002G200300.1.v4.1 annot-version=v4.1 MVKRAGSPCSSPVTITVSSGCKGGGSRSMGLTSPVPRTSISNNPNSPLSNNRNRTSSGGRYCSTSRDDATEENNSEFVSYTVHIPPTPDHQIFSASQSSL AEDIKNASKPDRSFISGTIFTGGFNSVTRGHVIDCSVENNESLKSGLVCGMKGCDEKAIKGKCECGFKICRDCYLDCVGSNGGGHCSGCKEPYKDVDDEG EDDDDDDYAYDEAKSEADDQALPLPKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNAVWPKDGYGVGSGGNGFEQPPEFGERSRRPLTRKVKV SAAILSPYRLLIVIRLVALGLFLAWRIRHPNREAMWLWGMSITCEVWFALSWILDQLPKLCPVHRVTDLSVLKERFESPNLRNPKGRSDLPGTDVFVSTA DPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGSLLTFEALAETANFARIWVPFCRKHNLEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDE FKVRINSLPESIRRRSDAYNAHEELRARKKQMEMGGNPSETVKVPKATWMSDGSHWPGTWASGEADHSRGDHAGIIQAMLAPPNAEPVFGVEADGESLID TTEIDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYISNSLALREGMCFMLDRGGDRICYVQFPQRFDGIDPSDRYANHNT IFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRTTEHHGWFGRRKIKLFLRKPKAAKKQEDEIALPINGDHGDIDDVDIESLLLLPIRFGNSTSLA ASIPVAEYQGRLLQDLQGKGNHGRPAGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTA PINLTDRLHQVLRWATGSVEIFFSRNNALFATRRMKFLQRVAYFNCGMYPFTSMFLIVYCVLPAISLFSGQFIVQSLSVTFLVLLLVITITLCLLAILEI KWSGITLNDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDGFADLYVVKWSFLMVPPITIMILNLIAIAVGVARTMYSPFPQ WSTLLGGVFFSFWVLSHLYPFAKGLMGRRGRVPTIVYVWSGLLSIIISLLWVYISPPNVVSLLAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.002G200300 [exp]	0	1	ATCSLD5.2
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	2.00	0.9816	HIK.3
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	3.16	0.9794
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	4.24	0.9776
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	4.47	0.9772	SNAP30.2
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	4.79	0.9663	ATCSLD5.1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	5.19	0.9758
AT5G27550			P-loop containing nucleoside t...		Potri.013G020700 [exp]	5.91	0.9762
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Potri.008G149500 [exp]	6.48	0.9711
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	6.70	0.9772
AT5G48310			unknown protein		Potri.014G172000 [exp]	8.83	0.9713

Compare expression of checked genes

Potri.002G200300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.