Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SYP42.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26980 397 / 1e-139 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT4G02195 395 / 2e-138 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT3G05710 392 / 2e-137 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT5G16830 57 / 3e-09 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT5G46860 52 / 1e-07 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT3G24350 44 / 9e-05 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) AT1G32270 42 / 0.0005 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020800 [exp] 423 / 2e-149 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 422 / 3e-149 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.001G138500 [exp] 52 / 1e-07 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 52 / 2e-07 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 47 / 1e-05 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.016G068600 [exp] 42 / 0.0004 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.019G036700 [exp] 41 / 0.001 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.006G202200 [exp] 40 / 0.001 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029864 [exp] 409 / 1e-143 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 404 / 1e-141 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 310 / 1e-105 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 189 / 8e-59 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10030953 [exp] 59 / 1e-09 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 57 / 6e-09 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10000311 [exp] 54 / 1e-08 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 55 / 5e-08 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10013589 [exp] 42 / 0.0004 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 42 / 0.0004 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.002G200400.1 pacid=42777460 polypeptide=Potri.002G200400.1.p locus=Potri.002G200400 ID=Potri.002G200400.1.v4.1 annot-version=v4.1 ATGGCAACAAGAAACCGTACCGTAGTGTACAAGAAGCACAGAGATGAAGTCAAGAGCGTGCGTGCTCCTTTATCATCGTCGCTGCCCGGTTCTAGCGGTC CGGTTATCGAAATGGTTAGCGCTTCGTTTCTTCGCTCCCAACATTCCTCTTATACTCCACTGAGCACCGAAGATCCAGGTCCTTCCACTTCCAGTGGTGA TGCGTTTACGATTGGTCTGCCGCTGGCGTGGGTGGATGATTCTGAGGAAATATCGCTGAATATTCAAAGAATTCGAACCAAAATGGGTGAGTTAGTCAAG GCGCACGCGAAAGCTTTAATGCCAACATTTGGAGACGGAAAAGAAGATGAACGAGTGATTGAAGGTCTTACTCGAGAGATTACGGGTTTATTGAGAAATT CCGGGACTAGATTAAAGAAAATTTCTGCAAGTGAGTCTTTTGAGGACTCAAATGTAAGAAAGAATGTACAGCGGGCGCTTGCAACAGAACTTCAGAACTT GTCGATGGATCTCCGTAGAAAACAATCCATGTATCTAAAACGTCTGCAGCAGCAAAAAGAGGGACATGACGGGGTTGATTTAGAGATGAGCCTGAATGCG AACAAGTTTAGATCGGAAGATGATGGATTTAGTGACGTGGGTTTTAATGAGGGTCAGATGCTTAAGCTAAAGAAGAGTGAGCAATTTACTGTTGACAGGG AAAGCGAGATCAAACAGGTCACAGAATCAGTGCATGAGCTTGCTCAAATCATGAAAGACCTATCGGTTCTGGTGATAGATCAGGGCACAATTGTTGATCG GATAGACTATAATATTCATAATGTTGCGTCAACAGTAGAGGAGGGCTTTAAACAGTTGCAGAAGGCAGAGAGAAATCAGAAGAAAGGAGGAATGGTGATG TGTGCAACAGTACTTGTTATAATGTGCTTCATAATGCTGACCCTCTTGATCCTCAAGGAGTCGCTGTTGTGA
AA sequence Show only first row Show all	>Potri.002G200400.1 pacid=42777460 polypeptide=Potri.002G200400.1.p locus=Potri.002G200400 ID=Potri.002G200400.1.v4.1 annot-version=v4.1 MATRNRTVVYKKHRDEVKSVRAPLSSSLPGSSGPVIEMVSASFLRSQHSSYTPLSTEDPGPSTSSGDAFTIGLPLAWVDDSEEISLNIQRIRTKMGELVK AHAKALMPTFGDGKEDERVIEGLTREITGLLRNSGTRLKKISASESFEDSNVRKNVQRALATELQNLSMDLRRKQSMYLKRLQQQKEGHDGVDLEMSLNA NKFRSEDDGFSDVGFNEGQMLKLKKSEQFTVDRESEIKQVTESVHELAQIMKDLSVLVIDQGTIVDRIDYNIHNVASTVEEGFKQLQKAERNQKKGGMVM CATVLVIMCFIMLTLLILKESLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26980		ATSYP41, ATTLG2...	syntaxin of plants 41 (.1.2)		Potri.002G200400 [exp]	0	1	SYP42.1
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	3.46	0.8709
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	8.94	0.8578
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	16.85	0.7921
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	18.49	0.8395
AT3G50780			unknown protein		Potri.005G129700 [exp]	24.97	0.8457
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	25.92	0.8517	SYN2.1
					Potri.011G012201 [exp]	27.34	0.8259
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	28.86	0.8524
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.014G151400 [exp]	35.79	0.8338
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	39.59	0.8175

Compare expression of checked genes

Potri.002G200400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.