Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 471 / 1e-163 unknown protein AT2G24960 234 / 2e-68 unknown protein AT5G05800 117 / 4e-28 unknown protein AT3G11290 97 / 2e-21 unknown protein AT4G02550 91 / 6e-20 unknown protein AT2G19220 68 / 7e-12 unknown protein AT3G11310 63 / 3e-10 unknown protein AT1G30140 60 / 6e-10 unknown protein AT5G27260 53 / 3e-07 unknown protein AT2G29880 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 270 / 6e-82 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 214 / 3e-60 AT2G24960 514 / 2e-168 unknown protein Potri.004G172900 [exp] 100 / 3e-23 AT2G24960 96 / 1e-21 unknown protein Potri.003G190900 [exp] 86 / 2e-18 AT4G02550 407 / 8e-144 unknown protein Potri.002G023800 [exp] 84 / 1e-17 AT2G24960 89 / 2e-19 unknown protein Potri.011G163248 [exp] 75 / 8e-15 AT4G02550 93 / 4e-22 unknown protein Potri.006G196716 [exp] 73 / 3e-14 AT4G02550 69 / 2e-13 unknown protein Potri.005G252500 [exp] 71 / 4e-13 AT4G02210 74 / 9e-15 unknown protein Potri.012G061366 [exp] 69 / 6e-13 AT4G02550 71 / 2e-14 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013421 [exp] 295 / 1e-95 AT4G02210 418 / 1e-144 unknown protein Lus10010304 [exp] 281 / 1e-89 AT4G02210 395 / 1e-135 unknown protein Lus10026250 [exp] 266 / 2e-80 AT2G24960 750 / 0.0 unknown protein Lus10042421 [exp] 97 / 1e-23 AT2G24960 92 / 1e-22 unknown protein Lus10014257 [exp] 96 / 1e-20 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025958 [exp] 93 / 1e-20 AT2G24960 102 / 4e-24 unknown protein Lus10002039 [exp] 87 / 1e-18 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 85 / 9e-18 AT5G05800 81 / 7e-17 unknown protein Lus10016838 [exp] 59 / 1e-09 AT2G24960 71 / 4e-14 unknown protein Lus10022379 [exp] 59 / 3e-09 AT5G27260 74 / 1e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G200600.1 pacid=42778675 polypeptide=Potri.002G200600.1.p locus=Potri.002G200600 ID=Potri.002G200600.1.v4.1 annot-version=v4.1 ATGGGCATGCAAGCCAGAAATGGTAATGATCGTCTCCGGACAATTTGGACCCCTGAAATGGATCGCTATTTTATTGACCTTCTACTAGAGCAGGTCAGCA ATGGAAACAAGTTTGATGATCATCTATTTAGCAAAAAAGCATGGAAGCATATGACCTACTTGTTCAATGCAAAATTCAAATTCCAATGTGAAAAGGATGT TTTGAAAAATCGGCACAAAACACTGAGGAATTTGTATAAGGCTGTCAAGAAGCTCCTTGAATATAAGGGCTTCAGCTGGGATGAGAATCGACAAATGGTG ACGGCTGATAATAATGATTGGGATGAATATATTAAGATACATCCAGATGCACGTGCATTCAGAATAAAAACTATACCATATTATAGTGATTTGTGCTTAA TATATGGAGATCCAACCGTTGAGAAAAAAGGTGACAATGTGCCAGAGTCACTGCCTTTGCCACTACCTTCTGAGAATGAAGAAGTCACAACCACCCAGCC AAATATTGGTAGTGAGGGAGTTGCTGAAATTCTTCAAGAAATCACAATTGATGAAGATTACAGAATATGTGTTTCAGAAGTAGTGGATGACTCTGTGACA AAAGGGGTAGGGGATGATGTGCAAGAGGCTGCACCAAATATCACAGGAAGCATGGCAAGCAACCGCACTCGGACATATTGGCAACCACCAATGGACCGCT ATTTCATTGACCTTATGCTTGAACAATGGCAGAAAGGAAATCAGATTGATGGTGTATTCCGGAAACAAGCATGGATGGACATGATTGCATCTTTCAATGC TAGGTTTGGCTTTAACTATGACGTGGATGTTTTGAAAAATCGCTTCAAAACTCTGAGAAGACAGCATAATGTTATAAAGAATCTCCTTGAATTAGATGGG TTTACTTGGGATGATGCTCGTCAAATGGTAACTGCTGATGATTATGTTTGGCAAGACTATATCAAGACGCATACAGATGCACGGCAGTTCATGACCCGGC CTATCCCATATTATAAAGATTTGTGTACGATATGCAGTGATCAAGACAGTGATGAGAGAGACTGCTTCTCTGCTCAATATGCAGAGCTGCAAAATGATTT CAAGATTGCCAAGTCTTGTGGAATGCCACAGAGCTCTCAGTCGCCAGCTGCATCAAATTCCAGTGGAGATGAAGTTGGTGGTATCTCGGACCCTGCTCAT ACAGCTTCAAAATCCAGTGCACCTACACAGAAGAACAAACGTCGATTAGAAAACCATTCAAATTCTGCTCCCCCCAAAAAGCCCCGTGGTGATGAGGATG GCATGGCTAGTGCCCTTCGTGAGATGGCAACTGCAGTCTCATCTTTATCAGATAAAAGGAAGGATGAAAACTCAAACTCCAACTCTATAGAGAAAGTAAT TGAAGCTATCCAATCATTGCCTGAAATGGACGAAGACCTTGTATTAGATGCCTGTGATTTATTAGAGGATGAATTGAAAGCGAAGACGTTTATGGCACTG GATGTTAAATTGCGAAAGAAATGGCTATTGAGGAAGCTTCGCCCAGAGTCGTAG
AA sequence Show only first row Show all	>Potri.002G200600.1 pacid=42778675 polypeptide=Potri.002G200600.1.p locus=Potri.002G200600 ID=Potri.002G200600.1.v4.1 annot-version=v4.1 MGMQARNGNDRLRTIWTPEMDRYFIDLLLEQVSNGNKFDDHLFSKKAWKHMTYLFNAKFKFQCEKDVLKNRHKTLRNLYKAVKKLLEYKGFSWDENRQMV TADNNDWDEYIKIHPDARAFRIKTIPYYSDLCLIYGDPTVEKKGDNVPESLPLPLPSENEEVTTTQPNIGSEGVAEILQEITIDEDYRICVSEVVDDSVT KGVGDDVQEAAPNITGSMASNRTRTYWQPPMDRYFIDLMLEQWQKGNQIDGVFRKQAWMDMIASFNARFGFNYDVDVLKNRFKTLRRQHNVIKNLLELDG FTWDDARQMVTADDYVWQDYIKTHTDARQFMTRPIPYYKDLCTICSDQDSDERDCFSAQYAELQNDFKIAKSCGMPQSSQSPAASNSSGDEVGGISDPAH TASKSSAPTQKNKRRLENHSNSAPPKKPRGDEDGMASALREMATAVSSLSDKRKDENSNSNSIEKVIEAIQSLPEMDEDLVLDACDLLEDELKAKTFMAL DVKLRKKWLLRKLRPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02210			unknown protein		Potri.002G200600 [exp]	0	1
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	4.24	0.8287
AT3G59670			unknown protein		Potri.005G144800 [exp]	6.32	0.8101
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.014G142600 [exp]	9.48	0.7452	MAX2.2
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	9.53	0.7747
AT4G10925			Nuclear transport factor 2 (NT...		Potri.001G089600 [exp]	11.83	0.7527
					Potri.008G139375 [exp]	12.60	0.7944
AT4G32750			unknown protein		Potri.006G241200 [exp]	12.96	0.7617
					Potri.001G407401 [exp]	17.32	0.7665
					Potri.010G026350 [exp]	18.16	0.7781
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G057100 [exp]	19.07	0.7859

Compare expression of checked genes

Potri.002G200600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.