Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47490 470 / 2e-168 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 376 / 1e-130 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G66380 172 / 2e-51 ATFOLT1 folate transporter 1 (.1) AT5G48970 128 / 3e-34 Mitochondrial substrate carrier family protein (.1) AT3G53940 122 / 9e-32 Mitochondrial substrate carrier family protein (.1) AT5G46800 119 / 2e-31 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT4G26180 119 / 3e-31 Mitochondrial substrate carrier family protein (.1) AT4G01100 115 / 1e-29 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G39970 114 / 3e-29 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT3G51870 112 / 4e-28 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125600 [exp] 567 / 0 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G121500 [exp] 405 / 5e-142 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 379 / 1e-131 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.007G019000 [exp] 163 / 5e-48 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.012G110700 [exp] 129 / 1e-33 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 125 / 3e-33 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 124 / 1e-32 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 125 / 3e-32 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 120 / 4e-31 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001463 [exp] 464 / 6e-166 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10034104 [exp] 388 / 1e-135 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10003041 [exp] 282 / 1e-95 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10028339 [exp] 134 / 2e-37 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10032522 [exp] 125 / 2e-32 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 125 / 2e-32 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 120 / 2e-30 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 117 / 2e-30 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 117 / 3e-30 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 117 / 1e-29 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.002G200900.1 pacid=42777392 polypeptide=Potri.002G200900.1.p locus=Potri.002G200900 ID=Potri.002G200900.1.v4.1 annot-version=v4.1 ATGTCCTCCACCGATTCTCATGTCCATCCTCGTCCTAATCCCAAGCAATGTCTTCTCTGCAATGCCGGCGCCGGTGCTGCTGCCGGAGTTATTGCCGCTA CATTCGTCTGTCCTTTAGATGTTATCAAAACTAGGTTTCAGGTTCATGGCCTGCCAAAACTCGATGTTGCTGCCAATAGTTTTAAAGGGAGTCTTATAGT TAGTAGTTTGGAACAAATATTCCGGAGGGAGGGGTTGCGTGGTATGTACCGGGGGCTTGCTCCAACCGTGCTCGCACTGCTTCCTAACTGGGCTGTTTAT TTTACAATCTACGAACAGCTCAAAAGCTTTCTTTGTTCCAATGATGAAGGTCATCATCTTTCAATAGGTGCTAATATGATAGCTGCTTCTGGTGCTGGAG CTGTAACAGCTATTTTCACAAATCCTCTTTGGGTTGTAAAGACAAGACTTCAAACTCAAGGAATGAGAGCTGGTGTTGTTCCATATAGGAGTACACTGTC TGCTTTGAGAAGAATAGCTTATGAGGAAGGCATCCGTGGGTTGTACAGTGGTCTTGTGCCTGCATTGGCTGGTATCAGTCATGTTGCCATCCAATTTCCA ACATACGAGAAGATCAAAATGTATTTGGCCACCCGAGATAATACCGCAATGGATAAACTAGGTGCACGTGATGTTGCTGTTGCCTCATCAGTCTCCAAAA TATTTGCTTCAACACTGACATATCCACACGAGGTAGTTCGCTCAAGGCTTCAAGAACAAGGCCACCACTCAGAAAAGCGTTACTCTGGTGTGGTCGATTG CATAAAGAAAGTATTTCAACAAGAGGGTCTCCCTGGATTTTACCGAGGGTGTGCGACCAACCTTATTAGAACAACGCCAGCTGCTGTTATTACATTCACC AGCTTTGAGATGATTCACAGATTTCTTGTTACCCTTTCCCCTCCTGATCCACAGCCTCAGACATTGTGA
AA sequence Show only first row Show all	>Potri.002G200900.1 pacid=42777392 polypeptide=Potri.002G200900.1.p locus=Potri.002G200900 ID=Potri.002G200900.1.v4.1 annot-version=v4.1 MSSTDSHVHPRPNPKQCLLCNAGAGAAAGVIAATFVCPLDVIKTRFQVHGLPKLDVAANSFKGSLIVSSLEQIFRREGLRGMYRGLAPTVLALLPNWAVY FTIYEQLKSFLCSNDEGHHLSIGANMIAASGAGAVTAIFTNPLWVVKTRLQTQGMRAGVVPYRSTLSALRRIAYEEGIRGLYSGLVPALAGISHVAIQFP TYEKIKMYLATRDNTAMDKLGARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVFQQEGLPGFYRGCATNLIRTTPAAVITFT SFEMIHRFLVTLSPPDPQPQTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.002G200900 [exp]	0	1
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.001G250100 [exp]	4.58	0.8885
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	9.32	0.7553
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	14.14	0.8661
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.003G139850 [exp]	18.16	0.8477
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	18.33	0.8555
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	23.23	0.8541
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	28.42	0.8510
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	29.66	0.8371
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	30.65	0.8553
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G144300 [exp]	31.01	0.8444

Compare expression of checked genes

Potri.002G200900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.