Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47500 1238 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 958 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 800 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 563 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 531 / 7e-174 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 520 / 1e-167 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G73860 515 / 2e-166 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 500 / 2e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 491 / 5e-158 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 345 / 2e-102 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125700 [exp] 1694 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 1134 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 1102 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 577 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 575 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 532 / 6e-172 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 521 / 1e-167 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 506 / 1e-162 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 495 / 1e-158 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009851 [exp] 1333 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 940 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 864 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 781 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 593 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032897 [exp] 556 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10010302 [exp] 547 / 0 AT2G47500 506 / 2e-171 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032264 [exp] 512 / 1e-163 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10001306 [exp] 503 / 1e-161 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10024628 [exp] 506 / 5e-161 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.002G201000.1 pacid=42779181 polypeptide=Potri.002G201000.1.p locus=Potri.002G201000 ID=Potri.002G201000.1.v4.1 annot-version=v4.1 ATGGCTGTTGAAGGAGGAGCATTGTCGTTTTCAGTGGCGTCGGTCGTGGAGGATGTGCTGCAACAGCATGGTAATAGACTCAGAGATCTTGATTTGGACT CTAGAAAAGCTGAAGAAGCCGCATCAAGAAGGTATGAAGCTGCGGGGTGGTTGAGAAAGATGGTAGGAGTGGTAGCAGGTAAGGATTTGCCAGCAGAGCC ATCTGAAGAAGAGTTTAGGCTTGGATTGAGAAGTGGAATCATTCTCTGCAATGCTCTCAATAAGGTTCAACCTGGAGCTGTGCCTAAGGTTGTGGAGAGT CCATGTGATGCTGCTCTTATACCTGATGGAGCTGCATTATCAGCATTTCAGTACTTTGAAAATGTTAGGAATTTTCTTGTAGCTGTACAAGAAATGGGGA TTCCTAATTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCTGCAAGGGTTGTGAATACTGTTTTGGCACTGAAATCGTACAATGAGTGGAAACAGAC TGGTGGAAATGGGATTTGGAAATTTGGTGGAAATGTAAAACCTACAGTGTCAGCAAAGTCTTTTGTAAGGAAAAACTCGGAACCATTCATGAATTCCTTA TCCAGAAACTTGTCAATGAATGAAAAATCTTTCAACACTCTGTCCAGTGATCTTGAAAACTCTAATAAAATGCCTGGGTCTGGTTCTTTGAGTATGCTTG TTCGTGCTGTTTTGTTGGATAAGAAGCCTGAAGAAGTTCCAGCATTAGTCGAATCAGTGCTCAGTAAGGTTGTGGAGGAATTTGAGAATCGCATAGCAAG CCAATATGATATGGTAAAGGCAGCTCCTAAAGAAATGACCATCTCTCAGGGCAACAGGTTTTTGCTGAAATCTGCATGTGGTGATAAAAGGACTGAAGAA AAAAATGTCAGAGTGATGAAGAAAGAGGAATGTTTTCATAAAAACCTAATTGATGATGAAGAATTAAAAAATAAAACGCAGAAACAGCAAATTATCTTTA GTCAACAGCAAAGAGATATCCAGGAATTAAAAAACACACTCCGTACAACAAAAGCTGGTATGCATTTTATGCAAATGAAATTTCATGAGGAGTTTAACAG TCTTGGCATGCACATCCATGGTCTAGCTCATGCTGCTTCAGGCTACCATAAGGTTCTTGAAGAAAATCGCAAGCTATATAATCAAGTGCAGGACCTCAAA GGAAGTATTCGGGTATATTGTCGAGTGAGACCATTTTTGTCTGGACAATCAAACTATATGAGCACAGTGGATCACATAGAAGATGGGAATATAACAATTA GCACCGCATCAAAACATGGGAAAGGATGCAAGTCCTTTAGCTTCAATAAAGTATTTGGACCATTGGCTACCCAAGCCGAGGTCTTCTCTGATATGCAGCC ACTAATTCGTTCCGTTCTTGATGGCTACAATGTTTGTATATTTGCATATGGTCAAACAGGATCGGGAAAAACTTACACCATGACAGGACCCAAAGATCTC ACAGATAAAAACCAAGGGGTGAATTATAGGGCATTGGGTGATTTGTTTCTTCTTGCAGAGCAAAGGAAAGACACCTTCTGCTACAATGTTGCTGTACAAA TGATAGAGATTTACAATGAGCAAGTCAGGGATCTCCTTGTTACTGATGGAAGTAACAAAAGGTTAGAAATTCGTAACAGCTCTCACACAGGTCTGAATGT ACCAGATGCAAACATCATTCCTGTGTCATCAACATGTGATGTTATTGATCTGATGTACCTTGGACATAGGAATCGTGCAGTGGGTGCAACAGCCCTAAAT GATCGCAGCAGTCGCTCGCATAGTTGCTTGACTGTCCATGTTCAAGGAAGAGACTTGACATCCGGAACTATTCTCCGTGGCTGTATGCATCTGGTTGATT TGGCTGGGAGTGAGAGAGTAAACAAATCTGAGGTGACAGGAGACAGACTAATAGAAGCAAAGCACATTAACAAATCCCTATCAGCTCTGGGTGATGTCAT CGCTTCCCTTGCCCAAAAGAATCCACATGTCCCTTACAGAAATAGCAAACTTACACAACTGCTCCAAGACTCACTTGGAGGGCAGGCCAAGACACTGATG TTTGTTCACATTAGCCCCGAGCCTGATGCAGTAGGAGAAACAATAAGTACTTTGAAATTTGCTGAGCGGGTAGCCACGGTGGAACTTGGTGCAGCTCAGG TGAACAAGGACGGTGCAGATGTCAAGGAACTCAAAGAACAAATTTCTAGCCTAAAGGCAGCATTAGCGAAGAAAGAGAGAGAACCAGAACACAGAAGAAA AGAAAGTGAATCATCACCATTCAACTCTAACCATCGGCTCGGAGATGCAAATGACAGCAATGCCTCCTTCCGCCAACCCATGGGGGATGTGGGCAACATA GAGGTTCACACAAAGTCTGCTCCGAGACAGAAGAGACAAAGCTTCGATCTTGATGAGATATTAGCAAACTCGCCTCCCTGGCCTCCGGTCATTAGCCCTG GTCAAAAGTACCCGGAGGATGAGAAGGAAATGGGCTCGGGCGAGTGGGTAGATAAGGTCATGGTGAACAAGCAAGATGCTGTAAACAGAGTAGAAAAGTC TCTAGGATGTTGGGATGCAGAAAATGGCAATTTGCCTGATGCCTTTTACCAGAAGTATCTTTCAGACTCCTCAAAAATTTACCCAGAACAATCCTATAAT ATGTTTGCGGGTAACAACCAGATCAACCTTGCTAATAATGACGACATGGACGATATTGATGCTGCCACCAGTGATTCATCAGAACCTGATTTGCTCTGGC AATTCAATCAGTCCAAGTTCACCGGTATAACAAATGGGATTGATTCAAAAACTAGCAAAGCAATTTCAAAAGCAGCCAGGAATCCAGAGTTGAGCAAGAA CTTAAATCCCTCGCTAGGCCCTTCACCGTCACGAAAGTCAGGAAATGGAGTTGGAGTTCCCCCGCAACAGAATAGAAGGCAGGCCGCTCCAGTTGACGGG AAACGCAAGAATGCAAGTAGGAAGTAG
AA sequence Show only first row Show all	>Potri.002G201000.1 pacid=42779181 polypeptide=Potri.002G201000.1.p locus=Potri.002G201000 ID=Potri.002G201000.1.v4.1 annot-version=v4.1 MAVEGGALSFSVASVVEDVLQQHGNRLRDLDLDSRKAEEAASRRYEAAGWLRKMVGVVAGKDLPAEPSEEEFRLGLRSGIILCNALNKVQPGAVPKVVES PCDAALIPDGAALSAFQYFENVRNFLVAVQEMGIPNFEASDLEQGGKSARVVNTVLALKSYNEWKQTGGNGIWKFGGNVKPTVSAKSFVRKNSEPFMNSL SRNLSMNEKSFNTLSSDLENSNKMPGSGSLSMLVRAVLLDKKPEEVPALVESVLSKVVEEFENRIASQYDMVKAAPKEMTISQGNRFLLKSACGDKRTEE KNVRVMKKEECFHKNLIDDEELKNKTQKQQIIFSQQQRDIQELKNTLRTTKAGMHFMQMKFHEEFNSLGMHIHGLAHAASGYHKVLEENRKLYNQVQDLK GSIRVYCRVRPFLSGQSNYMSTVDHIEDGNITISTASKHGKGCKSFSFNKVFGPLATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKDL TDKNQGVNYRALGDLFLLAEQRKDTFCYNVAVQMIEIYNEQVRDLLVTDGSNKRLEIRNSSHTGLNVPDANIIPVSSTCDVIDLMYLGHRNRAVGATALN DRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVNKSEVTGDRLIEAKHINKSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLM FVHISPEPDAVGETISTLKFAERVATVELGAAQVNKDGADVKELKEQISSLKAALAKKEREPEHRRKESESSPFNSNHRLGDANDSNASFRQPMGDVGNI EVHTKSAPRQKRQSFDLDEILANSPPWPPVISPGQKYPEDEKEMGSGEWVDKVMVNKQDAVNRVEKSLGCWDAENGNLPDAFYQKYLSDSSKIYPEQSYN MFAGNNQINLANNDDMDDIDAATSDSSEPDLLWQFNQSKFTGITNGIDSKTSKAISKAARNPELSKNLNPSLGPSPSRKSGNGVGVPPQQNRRQAAPVDG KRKNASRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	0	1
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	2.00	0.9464
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	3.00	0.9292
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	4.47	0.9417
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	4.47	0.9284
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	4.47	0.9384
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	4.89	0.9292
AT2G38370			Plant protein of unknown funct...		Potri.016G133300 [exp]	4.89	0.9263
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	8.12	0.9365
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.001G022700 [exp]	9.74	0.9370	ABI8.2
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	9.79	0.9389

Compare expression of checked genes

Potri.002G201000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.