Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02220 511 / 0 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) AT5G64830 55 / 3e-08 programmed cell death 2 C-terminal domain-containing protein (.1.2) AT5G65450 43 / 0.0004 UBP17 ubiquitin-specific protease 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080500 [exp] 63 / 1e-10 AT5G64830 293 / 7e-97 programmed cell death 2 C-terminal domain-containing protein (.1.2) Potri.001G378900 [exp] 44 / 0.0002 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G095200 [exp] 43 / 0.0004 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.006G270600 [exp] 43 / 0.0004 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G011300 [exp] 42 / 0.0004 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G009500 [exp] 42 / 0.0006 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042748 [exp] 442 / 2e-148 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10029718 [exp] 363 / 3e-123 AT4G02220 349 / 2e-117 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) Lus10017236 [exp] 46 / 3e-05 AT5G64830 196 / 3e-61 programmed cell death 2 C-terminal domain-containing protein (.1.2) Lus10015894 [exp] 44 / 0.0003 AT5G65450 216 / 9e-60 ubiquitin-specific protease 17 (.1) Lus10021075 [exp] 42 / 0.0008 AT5G64830 192 / 5e-59 programmed cell death 2 C-terminal domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0175 [poplar] [flax] PF04194 [poplar] [flax] PDCD2_C Programmed cell death protein 2, C-terminal putative domain
Representative CDS sequence Show only first row Show all	>Potri.002G201200.1 pacid=42779292 polypeptide=Potri.002G201200.1.p locus=Potri.002G201200 ID=Potri.002G201200.1.v4.1 annot-version=v4.1 ATGAGTGCGAAGGGAGACTCTACAGAAAAGCTCAAGGGAGTACAGATTTCCTCGCTTGATGAAGACGATGAGGTTGAAGAAGTCGTTGAAGAAGAAGAAG AAGAAGAAGAAGGTGACGATAGTGAAGAAGAAGAAGAACCAGTAACACTAGGTTTCTTGGAAAAGACAAAGAATTGTTGGTCTCTTTTGCGGCAAGTATT TCCTAGCAAGGCTGGTGGCGTGCCGGCATGGCTGGATCCTGTTAATTTACCATCTGGAAGGTCTTGTGTTTGTGATATATGTGAAGAACCTTTACAGTTT TTGCTTCAGGTATATGCACCAATAACAGAGAAGGAATCAACATTTCATCGAACATTGTTTGTGTTCATGTGCCCATCAATGTCCTGTCTTCATAGAGATC AACATGAGCAATGGAAGCGCAGTCCAGAAAAACCATCTCGAAGTGTGAAGGTTTTTCGTTGTCAATTACCTTGCTCTAATCCTTTTTACTCAAGTGAGCC TCCAAGAAACGATGGAACTGATAAACCGTCTGGATCTGGGGTTTCGCTTTGTAACTGGTGTGGTACCTGGAAAGGAGATAAAGTTTGTAGTGGTTGCAAA AGAACAAAATACTGCTCCCATAAACACCAGGTTTTGCACTGGCACTCAGGTCACAAAATTGATTGTCAACAGTTGAGCCTTTCAGTTGACTCTAGTTCCA GTAAGAATGGAACCACTTCGGCAGAGATCATTAAAGTTGTTAGCAATGCCTTGTGGCCAGAGTATGAGATGATAAATGATGATGAAAATGAATATGATGC TGAAATGTCTGATGATAACATACCCACTCATTCACTGGTGTCTAGGAACAAAATGGACAGCACAATGAATTCGTTGTTGGACATTTTTGAGGGCAATAGT GACAAAAAGTGCTGGGCGTCTTTCCAACAGCGCATAGCCAAAGCGCCCGAACAAGTGTTAAGGTATTGTAGGAATGCTAGTGCAAAACCCCTATGGCCTC TGTCAAGTGGTCAGCCATCTAAGGCTGACATCCCTAACTGCAGTTACTGTGGTGGTCCTTCAGATTTTGAGTTTCAGATCTTACCTCAGCTACTTTACTA CTTCGGTGTAAAGAATGATGCGGATTCTCTTGATTGGGCAACCATTGTTGTGTACACCTGCAAATCCTCTTGTGAGGCAAGCATGGCTTACAAAGAAGAA TTTCCCTGGGTTCAGCTCTACCCAACATCTGCAACTTGA
AA sequence Show only first row Show all	>Potri.002G201200.1 pacid=42779292 polypeptide=Potri.002G201200.1.p locus=Potri.002G201200 ID=Potri.002G201200.1.v4.1 annot-version=v4.1 MSAKGDSTEKLKGVQISSLDEDDEVEEVVEEEEEEEEGDDSEEEEEPVTLGFLEKTKNCWSLLRQVFPSKAGGVPAWLDPVNLPSGRSCVCDICEEPLQF LLQVYAPITEKESTFHRTLFVFMCPSMSCLHRDQHEQWKRSPEKPSRSVKVFRCQLPCSNPFYSSEPPRNDGTDKPSGSGVSLCNWCGTWKGDKVCSGCK RTKYCSHKHQVLHWHSGHKIDCQQLSLSVDSSSSKNGTTSAEIIKVVSNALWPEYEMINDDENEYDAEMSDDNIPTHSLVSRNKMDSTMNSLLDIFEGNS DKKCWASFQQRIAKAPEQVLRYCRNASAKPLWPLSSGQPSKADIPNCSYCGGPSDFEFQILPQLLYYFGVKNDADSLDWATIVVYTCKSSCEASMAYKEE FPWVQLYPTSAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02220			zinc finger (MYND type) family...		Potri.002G201200 [exp]	0	1
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	5.29	0.8167
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	5.83	0.8406
AT3G54790			ARM repeat superfamily protein...		Potri.002G037700 [exp]	14.28	0.8037
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	16.09	0.8118
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	17.23	0.8076	Pt-ANN5.1
AT1G75510			Transcription initiation facto...		Potri.002G028900 [exp]	20.00	0.8045
AT1G11330			S-locus lectin protein kinase ...		Potri.005G014802 [exp]	20.19	0.8175
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.014G120201 [exp]	20.78	0.8125
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108300 [exp]	22.22	0.7849
					Potri.007G093850 [exp]	23.36	0.7697

Compare expression of checked genes

Potri.002G201200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.