Plant FIBer expression Database

FUM1.1 (Potri.002G201300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol FUM1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47510 877 / 0 FUM1 fumarase 1 (.1.2)
AT5G50950 869 / 0 FUM2 FUMARASE 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009114
[exp]
904 / 0 AT2G47510 882 / 0.0 fumarase 1 (.1.2)
Lus10028532
[exp]
897 / 0 AT2G47510 881 / 0.0 fumarase 1 (.1.2)
Lus10032296
[exp]
834 / 0 AT5G50950 849 / 0.0 FUMARASE 2 (.1.2.3)
Lus10032846
[exp]
45 / 0.0001 AT5G10920 753 / 0.0 L-Aspartase-like family protein (.1)
Lus10002606
[exp]
45 / 0.0001 AT5G10920 769 / 0.0 L-Aspartase-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00206 Lyase_1 Lyase
PF10415 FumaraseC_C Fumarase C C-terminus
Representative CDS sequence
>Potri.002G201300.1 pacid=42780178 polypeptide=Potri.002G201300.1.p locus=Potri.002G201300 ID=Potri.002G201300.1.v4.1 annot-version=v4.1
ATGGCGATGTATATCGTGTCACGGCGCCTCTCTACAGGATCCACGACTTGGCGTTATGGAAACTGGTTGAGGTCTTATTCAACTGCCTTCAGAGAGGAGA
GAGACACTTTTGGTCCCATTAGTGTCCCTGCTGATAAGCTATGGGGTGCTCAGACGCAAAGATCTTTGCAGAATTTTGATATAGGCGGCGATCGCGAGCG
AATGCCCGAACCTATCATTCGAGCCTTTGGTATACTCAAGAAATGTGCTGCCAAGGTGAATATGCAGTATGGGCTTGATCCTTCCATAGGGAAAGCGATA
ATGCAAGCTGCCCACGAGGTAGCTGAAGGGAAGCTAAGCGATCATTTTCCACTGGTTGTGTGGCAGACTGGCAGTGGTACTCAAAGTAACATGAATGCTA
ATGAGGTTATTGCCAATAGAGCAGCTGAGATCCTTGGGCATAAGCGTGGGGAAAAGTTTGTGCACCCTAATGACCACGTGAACAGATCACAATCTTCTAA
TGACACATTTCCAACTGTAATGCATATTGCAGCTGCAACGGAGATAAATTCAAGATTAATCCCAAAATTGAAAACTTTGCACTTGACACTCCATTCAAAG
TCAGTTGAATTCAAAGATATTGTTAAAATTGGGCGCACGCACACTCAAGATGCAACACCATTGACACTTGGGCAAGAGTTTAGTGGCTACACGACACAAG
TGAAGTATGGAATTGATCGTGTCATGTGCACGCTACCCCACATGTATCAGCTTGCACAAGGTGGAACTGCTGTGGGGACTGGATTAAACACAAAGAAAGG
GTTTGATGTAAAGATAGCTTCAGCAGTGGCTGAGGAAACAAACCTGCCATTTGTCACAGCGGAAAACAAGTTTGAAGCTTTGGCTGCACATGATGCTTTT
GTTGAAACTAGTGGAGCACTCAACACAGTTGCTACTTCTCTGATGAAGATTGCAAATGACATACGGTTATTAGGAAGCGGTCCACGATGTGGTCTTGGTG
AACTCATTCTTCCTGAAAATGAGCCAGGAAGTAGTATAATGCCGGGAAAGGTTAATCCCACCCAATGTGAGGCTCTCACAATGGTCTGTGCTCAGGTTAT
GGGAAATCATGTTGCCATAACAGTTGGTGGATCAAATGGTCACTTTGAACTAAATGTATTCAAGCCAATGATCGCTAGTGGCCTCCTACATTCAATAAGG
TTGCTTGGTGATGCATCTGCTTCCTTTGAAAAGAACTGTGTGAGGGGTATTCAAGCCAATAGGGAAAGAATTTCGAAATTACTGCATGAGTCGCTGATGC
TTGTCACATCATTGAACCCTAAAATTGGTTATGACAATGCTGCAGCAGTTGCCAAGCTGGCCCACAAGGAGGGAAGTACTCTGAAGGAAGCTGCACTAAA
ACTCGGAATGCTCACCAGTGAAGAATTTGATACACTCGTAGTCCCTGAAAAAATGATCGGGCCAACTGACTGA
AA sequence
>Potri.002G201300.1 pacid=42780178 polypeptide=Potri.002G201300.1.p locus=Potri.002G201300 ID=Potri.002G201300.1.v4.1 annot-version=v4.1
MAMYIVSRRLSTGSTTWRYGNWLRSYSTAFREERDTFGPISVPADKLWGAQTQRSLQNFDIGGDRERMPEPIIRAFGILKKCAAKVNMQYGLDPSIGKAI
MQAAHEVAEGKLSDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPKLKTLHLTLHSK
SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVMCTLPHMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETNLPFVTAENKFEALAAHDAF
VETSGALNTVATSLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMIASGLLHSIR
LLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKLAHKEGSTLKEAALKLGMLTSEEFDTLVVPEKMIGPTD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47510 FUM1 fumarase 1 (.1.2) Potri.002G201300
[exp]
0 1 FUM1.1
AT5G58640 Selenoprotein, Rdx type (.1.2) Potri.016G117600
[exp]
3.74 0.8973
AT3G13930 Dihydrolipoamide acetyltransfe... Potri.003G043900
[exp]
4.47 0.8950
AT5G14040 PHT3;1 phosphate transporter 3;1 (.1) Potri.001G322300
[exp]
9.32 0.8970 PtrPht3-2
AT5G15610 Proteasome component (PCI) dom... Potri.004G116700
[exp]
9.89 0.8990
AT1G23170 Protein of unknown function DU... Potri.010G110500
[exp]
10.58 0.8511
AT4G29870 Oligosaccharyltransferase comp... Potri.006G072600
[exp]
18.57 0.8465
AT5G57020 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL... Potri.018G066200
[exp]
21.33 0.8383 NMT1.5
AT5G07350 TSN1, AtTudor1 Arabidopsis thaliana TUDOR-SN ... Potri.015G109300
[exp]
22.04 0.8418 Pt-SN4.1
AT2G35290 unknown protein Potri.001G142700
[exp]
22.73 0.8776
AT1G77940 Ribosomal protein L7Ae/L30e/S1... Potri.005G080700
[exp]
23.32 0.8953

Potri.002G201300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.