Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33390 1057 / 0 ATFAS4 FASCIATED STEM 4, RNA helicase family protein (.1) AT1G32490 216 / 2e-57 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G26560 212 / 1e-55 ATP-dependent RNA helicase, putative (.1) AT2G35340 210 / 3e-55 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 206 / 8e-54 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G47250 198 / 1e-52 RNA helicase family protein (.1) AT3G62310 191 / 2e-50 RNA helicase family protein (.1) AT1G27900 188 / 2e-49 RNA helicase family protein (.1) AT4G18465 184 / 4e-48 RNA helicase family protein (.1) AT1G26370 176 / 2e-45 RID1 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172500 [exp] 209 / 1e-54 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.015G024400 [exp] 204 / 3e-53 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 202 / 1e-52 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 199 / 6e-52 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G057200 [exp] 192 / 1e-50 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 189 / 1e-49 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 188 / 2e-49 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 185 / 3e-48 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 175 / 3e-45 AT4G18465 1092 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025616 [exp] 1209 / 0 AT1G33390 1175 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10028066 [exp] 706 / 0 AT1G33390 1148 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10009600 [exp] 196 / 1e-53 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10036783 [exp] 202 / 1e-52 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10036991 [exp] 196 / 6e-52 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 193 / 4e-51 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10031647 [exp] 194 / 3e-50 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 191 / 4e-49 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10025127 [exp] 186 / 8e-49 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10005261 [exp] 183 / 2e-47 AT3G62310 1300 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.002G201400.5 pacid=42778609 polypeptide=Potri.002G201400.5.p locus=Potri.002G201400 ID=Potri.002G201400.5.v4.1 annot-version=v4.1 ATGGAAGTACATTTGGAAAATTCATGTGTGGAAGGTGATAGCAACGCATTGATCATGCCTGCAAAGAAAAGTAATAAAAGGAAAGGCATGAATCAGGCGC AAGAAGTGGCCAAGAAAAATAAAAACCCACAGTTAAGTAAATCTCAGAAAAGAAAATTGAAGAAGCTGGAGGAGGAGAATGAGAGAACACTGCTGTTATC AAAAAGCATAGAAACCCTGGAGAAATATAAGATCCCGGAGGATGCGTTTTCTCTCCTGCAATCATCAAGAAATATAAGTCGGGTTGAAACTGTTAAAGAA AAACGTAGGATGGCAGTACAATTTTCCAAGGCTGGTTTAAGTCCCCAGGGTGACCAGCCTTTCAAGAGGAATCATGAAACTGCTTCTTTTGAGATTGAAG CTGGGTTGGATGAGATCCAATCAAAGAAGGATATGAATGAGAAAGGCCATTTACAACCAATGGTAATAGGAAGAGAAGTTCAAAACCATGCATCTTTTTC ACTGGTGTATCACGATCCAGTTAGCGGTAATGAGCTTGGCTTAAATGGCAGATCTGTTTCTGCCTTCTCAGCTGAAGAAGTGCCCAATGAGGATAATTGT ACACCTACACTGGAAGTTCCTAAAAAATCTTCACAGGCTTCAAGTGATCATGATGCTAGAAAAACTTCCAGTTTAATGGGTAAATTAAATGAGAGCTCAA CTGTAGATTTAGGAAAGGCTAGCAATTTCCCAGATTTTCCATTGCCAAGACCTCCTACTACCCCAACAGTGGTGCATGTATCAAGGCCAGATGAGGTGGA GAAGAAACGGAAGGATCTTCCAATTATTATGATGGAACAGGAGATAATGGAAGCTATAAATGAACATTCCACTGTTATTATCTGTGGAGAAACTGGGTGT GGTAAAACCACTCAAGTTCCTCAGTTTCTTTATGAAGCAGGTTATGGTTCAAACCATTCTGTTGTTAGAAATGGTGTTATTGGTGTTACTCAACCACGGC GCATTGCTGTCCTTGCCACTGCTAGACGGGTTGCATTTGAACTTGGTCTTCATCTTGGTAAAGAGGTTGGATTCCAAGTTAGGCATGACAAGAGAATTGG AGACAATTGTTCAATCAAGTTTATGACTGATGGAATATTACTACGAGAAGTTCAGACTGATATTTTATTGAAGCGTTACTCTGTGATAATTCTGGATGAG GCTCATGAGAGAAGTGTGAATACAGACATTCTTATTGGAATGCTCTCTCGTGTAATTCAACTCCGCCAGAAGAAATATGAGCAGCAGCAAAAAATGGTGC TTTCTGGTCAAAGTCTAAGTCCTGAAAATATGATATTTCCACTAAAACTTGTTCTAATGAGTGCCACCTTGCGAGTGGAGGACTTCATTTCTGAAAGAAG GTTATTTCATGATCCTCCTCCAGTTATAAACGTTCCTACCAGGCAATTTGAAGTGACAGTGCATTTCTCGAAGAGAACAGAAACTGTGGATTATATTGGC CAGGCCTATAAGAAAGTCATGTCAATCCACAAGAGGCTGCCACAAGGAGGCATACTTGTCTTTGTCACAGGACAGAGAGAAGTAGAGTACTTGTGTCAGA AGTTACGTAAAGCTTCAACAGAGTTGATTGCTAATACTGCTAAAGGGCGTGCAGGGGATGAGGTCCCAGCAATGTCTGAAATGGTTTCCATTGAAGGTGT TGACATGAAGGATATTGATGAGGCATTTGAGATTCAGGGGAATTCGATTGACCAGCAAACTGAGAGGTTTGGCTCTCATGATGAAGGTGTGCCAGATTCT GAGGATGAATCAGATGTCTCTTATGATTCAGGATCTGAGAGCGAAGTAGAAATTGTTGGTGATGAGGTGGATATAGAGGATTCAAAAACATCTGAAAATG ATGTTGTGGGTGTTCTACGAGAGAAAAGTAGCCTTGCTGCATTGAAGTGTGCTTTTGAAGCTTTGGCTGGAGAGAATGCATCAGAATGTAAATCAGAGGG AAAACAAGTTCCTTCTATGCCAGAAGAGTACCCAGAACAATACAAAAATAGCATGGAGAAGAAAACAGTAGGAGATAAGGGTCTTTTTACTAGTGCTCTG CGTGTTATGCCTCTTTATGCCATGCTTCCTGCAGTGGCACAGCTCCATGTATTTGATGAGGTCAAGGAAGGGGAGCGGCTTGTTGTTGTTGCCACTAATG TTGCTGAAACTTCTTTAACCATCCCAGGGATAAAATATGTGGTTGATACTGGAAGAGAAAAGGTGAAGAACTACAACTCATCAAATGGCATGGAAGCATA TGAAGTACAATGGATAAGTAAGGCTTCAGCTGATCAGCGCAAAGGAAGAGCAGGAAGAACAGGGCCTGGCCACTGTTACCGTCTTTATTCTTCTGCTGTC TATAATAACATACTTCCTGACTTCTCTTGTGCTGAAATATCTAAAGTACCTGTTGATAGCATTGTTCTTGTCCTGAAATCCATGCATATTGACAAGGTAG AAAAGTTCCCATTTCCAACTCCTCCAGAGGCTGCTGCCTTAGTAGAAGCAGAACGTTGCTTGAAGACCTTGGAAGCTCTTGATAATACAGGAAGACTGAC ATCCCTAGGGAAGGCCATGGCTTGCTATCCCATGAGTCCTCGTCACTCTCGAATGCTCCTTACAGCTATCCAAATTACGAGGAAAATGAAAGATCTTGAT ACAGCAAATCTGGTTCTAGGATATGCAGTTGCAACAGCTGCAGCATTGAGCTTTTCCAATGCTTTTCTTAAGCATTTTGAAGGAAGTCATACTGACAGCA ATGGCTCAGAACAGGATGGAAGATCTAGTAGCCTAGGAAGCAATAAAATTTTAGACAAGCAAGAAAAAATAAAGATAAAGAAACTCAGAGAAACAACTAA ATTATCCCGTGCTCGATTTTCCAATTCTACTAGTGATACATTGACTGTAGCTTATGCCTTGCATTGTTTTGAACTTTCTACAAGCCCGGTGGAATTCTGC CACGAAAATGCCTTGCACCTTAAAACCATGGAAGAAATGTCCAAGCTTAGGAGGCAGCTTCTTCAACTGGTCTTTAATCATCATGTTCACGAGTTAGAGC AGGGTTTCTCTTGGACCCATGGGACCGTGGAGGATGTAGAACAAGCTTGGAGGGTTTTGTCCAGTAAGAGGTCTACTTTATTGAATGTGGAAGATATCTT AGGCCAAGCTATCTGTGCTGGCTGGGTTGATAGGGTTGCAAAACGCATCAGAGGAAATTCAGGCACCTTGGAAGGAGACAGAAAAGCAAGTGCTGTTCGG TATCAAGCCTGCATGGTTAAAGAAACAGTATTCCTTCATCGGCGGTCCTCTCTTTCTAATTCAGCGCCTGAGTTTTTGGTGTACAGTGAATTGCTTCATA CAAAGCGGCCTTACATGCATGGGGCCACAAGCATTAAACCAGAATGGCTTGCCAAGTATGGTGTGTCGTTGTGCAGTTTTTCAACTGTAGAAGACCGGAA ACCTGAATATGATCCTCAAACTGACCAATTATATCGTTGGGTCATTCCAACCTTCGGGCCACATCTGTGGCGACTTCCAGCACAAAGTATGCCAATTAGC AGTGATGAGGATCGACTCAAGGTATGTGCAAAGTTTCCAGAACTAATCCACTCATTGAAGCAGATAAAGCGGGGAGTCAAGGATCAAAAGTTGAAAGGTT AG
AA sequence Show only first row Show all	>Potri.002G201400.5 pacid=42778609 polypeptide=Potri.002G201400.5.p locus=Potri.002G201400 ID=Potri.002G201400.5.v4.1 annot-version=v4.1 MEVHLENSCVEGDSNALIMPAKKSNKRKGMNQAQEVAKKNKNPQLSKSQKRKLKKLEEENERTLLLSKSIETLEKYKIPEDAFSLLQSSRNISRVETVKE KRRMAVQFSKAGLSPQGDQPFKRNHETASFEIEAGLDEIQSKKDMNEKGHLQPMVIGREVQNHASFSLVYHDPVSGNELGLNGRSVSAFSAEEVPNEDNC TPTLEVPKKSSQASSDHDARKTSSLMGKLNESSTVDLGKASNFPDFPLPRPPTTPTVVHVSRPDEVEKKRKDLPIIMMEQEIMEAINEHSTVIICGETGC GKTTQVPQFLYEAGYGSNHSVVRNGVIGVTQPRRIAVLATARRVAFELGLHLGKEVGFQVRHDKRIGDNCSIKFMTDGILLREVQTDILLKRYSVIILDE AHERSVNTDILIGMLSRVIQLRQKKYEQQQKMVLSGQSLSPENMIFPLKLVLMSATLRVEDFISERRLFHDPPPVINVPTRQFEVTVHFSKRTETVDYIG QAYKKVMSIHKRLPQGGILVFVTGQREVEYLCQKLRKASTELIANTAKGRAGDEVPAMSEMVSIEGVDMKDIDEAFEIQGNSIDQQTERFGSHDEGVPDS EDESDVSYDSGSESEVEIVGDEVDIEDSKTSENDVVGVLREKSSLAALKCAFEALAGENASECKSEGKQVPSMPEEYPEQYKNSMEKKTVGDKGLFTSAL RVMPLYAMLPAVAQLHVFDEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYNSSNGMEAYEVQWISKASADQRKGRAGRTGPGHCYRLYSSAV YNNILPDFSCAEISKVPVDSIVLVLKSMHIDKVEKFPFPTPPEAAALVEAERCLKTLEALDNTGRLTSLGKAMACYPMSPRHSRMLLTAIQITRKMKDLD TANLVLGYAVATAAALSFSNAFLKHFEGSHTDSNGSEQDGRSSSLGSNKILDKQEKIKIKKLRETTKLSRARFSNSTSDTLTVAYALHCFELSTSPVEFC HENALHLKTMEEMSKLRRQLLQLVFNHHVHELEQGFSWTHGTVEDVEQAWRVLSSKRSTLLNVEDILGQAICAGWVDRVAKRIRGNSGTLEGDRKASAVR YQACMVKETVFLHRRSSLSNSAPEFLVYSELLHTKRPYMHGATSIKPEWLAKYGVSLCSFSTVEDRKPEYDPQTDQLYRWVIPTFGPHLWRLPAQSMPIS SDEDRLKVCAKFPELIHSLKQIKRGVKDQKLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	1.73	0.8556
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	4.24	0.8395
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	5.65	0.8403
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	6.48	0.8297
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	6.70	0.8300
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	6.92	0.8213
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	8.24	0.8326	Pt-ABA3.1
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	9.00	0.8242
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	13.96	0.8163
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	14.49	0.8227

Compare expression of checked genes

Potri.002G201400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.