Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PGA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02790 400 / 2e-137 PGA4 polygalacturonase 4 (.1) AT4G18180 322 / 4e-107 Pectin lyase-like superfamily protein (.1) AT3G07820 310 / 7e-103 Pectin lyase-like superfamily protein (.1) AT3G07830 306 / 3e-101 Pectin lyase-like superfamily protein (.1) AT3G14040 304 / 9e-100 Pectin lyase-like superfamily protein (.1) AT3G07850 302 / 5e-99 Pectin lyase-like superfamily protein (.1) AT3G07840 299 / 3e-98 Pectin lyase-like superfamily protein (.1) AT1G05650 291 / 2e-95 Pectin lyase-like superfamily protein (.1) AT5G48140 291 / 2e-95 Pectin lyase-like superfamily protein (.1) AT1G17150 286 / 4e-93 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202200 [exp] 842 / 0 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.010G011100 [exp] 378 / 3e-129 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.010G007300 [exp] 375 / 4e-128 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.010G011200 [exp] 369 / 2e-125 AT1G02790 300 / 1e-98 polygalacturonase 4 (.1) Potri.009G169100 [exp] 346 / 3e-116 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 339 / 5e-114 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 339 / 5e-114 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 339 / 5e-114 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 339 / 5e-114 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003782 [exp] 359 / 2e-121 AT1G02790 323 / 4e-107 polygalacturonase 4 (.1) Lus10012489 [exp] 358 / 9e-121 AT1G02790 307 / 6e-101 polygalacturonase 4 (.1) Lus10003001 [exp] 318 / 7e-102 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 298 / 8e-98 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 295 / 1e-96 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 291 / 4e-95 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 290 / 1e-94 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 286 / 4e-93 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 286 / 4e-93 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 285 / 8e-93 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.002G202100.1 pacid=42777013 polypeptide=Potri.002G202100.1.p locus=Potri.002G202100 ID=Potri.002G202100.1.v4.1 annot-version=v4.1 ATGACCATTGCAGGAAGCATTCTTGTTTTAGGCTTAGCTTTGCTCTCTTGCGTGGCCGATGGTGCACTTCGCCACCATATTGGTCTCAGTGACCGTCGTA GCCTGATTGATGGTAGTGGTGCCGCGGTTACAGTTTTTGATGTAACAAAACACGGTGCCAAGGCTGATGATAAGACCGATAACGCAGAGGCATTTATCCA AACATGGCGGGCAGCATGTGATTCAGGTGCTCCAGCTAAGATGGTTATCCCTGGAGGGACATTTTTGACAAGCCCTGTCGTATTTCAAGGGCCGTGCAAA AGCACAGAGCCTATAGTTTTTGAAGTACAGGGAAACGTGAAAGCTACAACTGATCTCAGTGAATATAGTTCAGAACAATGGATCTTATTTGAAATAATTG ATGGTTTAACATTGAACGGTGGAGGAACTTTTGATGGGCAAGGCAGTGCCGTCTGGAAGTACAACGATTGCCATCAAAACAAGGAATGCCAGCCACTTCC CAGTTCCATTAAGTTGAGCAAAGTAAAGAATGCTTTTGTTCACGAGATCAGCTCTGTCGATAGCAAATATTTCCACATGCACGTTACAAGCTGCAACAGC ATTTCGATCCACAATATCAATTTGACTGCTCCTGCTAATAGCCCAAATACAGATGGTATTCACATAAGCCATTCTGATGGTGTCCACGTAACAAGCAGCA AGATTGGAACAGGTGATGACTGTATTTCCATTGGACAAGGATCCACAAATATTCTCATCTCTCAAGTCTTTTGCGGCCCTGGACATGGCCTTAGTGTTGG AAGCCTTGGCAAGTACAAGAACGAGGAGGATGTGAGAGGAATTGTTGTGACTAACTGCACATTGTTTAACACCACCAATGGTGTGAGAATCAAATCATAT GCTGCATCTGACCCTAGCCAAGCTTTAAATATCACTTTTAAAGATATCACTATGGATAGTGTGAAAAATCCCATTATCATTGATCAGAAGTATGGTTCCC GCAATGGCGCGCCATCACGAGTGAAAATTAGCAATGTTCATTACCAGAACATCAAAGGCACCTCAACTTCCGATGTTGCTGTCAGTTTTTCGTGCAGTTC ATTGGTTCCTTGTCAAGGAGTAGAGCTTGTGGACATCGATTTGGCCTATATCGGCCAGAAAGCAAACGTGCCTCTCTCAGCTTCATGTTTGAATGCAAAT ATTGTTAAATCGGGCGGCAAACAGAACCCAGGATGTAATTGA
AA sequence Show only first row Show all	>Potri.002G202100.1 pacid=42777013 polypeptide=Potri.002G202100.1.p locus=Potri.002G202100 ID=Potri.002G202100.1.v4.1 annot-version=v4.1 MTIAGSILVLGLALLSCVADGALRHHIGLSDRRSLIDGSGAAVTVFDVTKHGAKADDKTDNAEAFIQTWRAACDSGAPAKMVIPGGTFLTSPVVFQGPCK STEPIVFEVQGNVKATTDLSEYSSEQWILFEIIDGLTLNGGGTFDGQGSAVWKYNDCHQNKECQPLPSSIKLSKVKNAFVHEISSVDSKYFHMHVTSCNS ISIHNINLTAPANSPNTDGIHISHSDGVHVTSSKIGTGDDCISIGQGSTNILISQVFCGPGHGLSVGSLGKYKNEEDVRGIVVTNCTLFNTTNGVRIKSY AASDPSQALNITFKDITMDSVKNPIIIDQKYGSRNGAPSRVKISNVHYQNIKGTSTSDVAVSFSCSSLVPCQGVELVDIDLAYIGQKANVPLSASCLNAN IVKSGGKQNPGCN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.002G202100 [exp]	0	1	Pt-PGA3.1

Compare expression of checked genes

Potri.002G202100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.