Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02290 819 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 760 / 0 ATCEL2 cellulase 2 (.1) AT1G70710 592 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 588 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G22880 569 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 563 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G39010 542 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 507 / 5e-177 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G23560 479 / 4e-166 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 479 / 5e-166 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126900 [exp] 907 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 642 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.008G132700 [exp] 591 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 587 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 584 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.004G162200 [exp] 577 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 560 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G127900 [exp] 551 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 539 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008208 [exp] 849 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 718 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10013418 [exp] 666 / 0 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10025880 [exp] 657 / 0 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10029071 [exp] 593 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 588 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10018077 [exp] 554 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 549 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10002930 [exp] 531 / 0 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10027205 [exp] 527 / 0 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.002G202400.1 pacid=42778437 polypeptide=Potri.002G202400.1.p locus=Potri.002G202400 ID=Potri.002G202400.1.v4.1 annot-version=v4.1 ATGGCTTGCGCTAATTTCTCTTTCACATTTCTAGTCCTCTGCTCTTGTTTTGCTACTTCTTTTATTGCATGCCATGGCTTTCCCGTCCATCACAACAACC CATTCCACCACCGCCGCCACCCTCGCTTTGCCAGTCATAACTACAGAGATGCCCTGACCAAATCAATCCTCTTTTTCGAAGGCCAAAGGTCTGGTAAGCT CCCTTCTAGCCAGAGGATGACATGGAGGAGAGACTCGGGTCTAACAGATGGCTCAACCATGCATGTGGATTTGGTGGGAGGTTATTATGATGCAGGAGAC AATGTGAAGTTTGGATTCCCTATGGCTTTCACTACAACCATGCTTTCATGGAGTGTTTTAGAGTTCGGGGGGTTGATGAAAGGTGAGCTGCAGAACGCTA GAGAAGCCATTCGTTGGGCAACTGATTACCTCCTCAAAGCTACAGCCCATACAGACACCATCTATGTTCAGGTAGGTAACGCTAATAAGGACCATGCTTG TTGGGAGAGACCAGAAGATATGGATACTCCAAGGAGTGTTTTCAAGGTTGACAAGCATTCCCCTGGTTCTGATGTTGCTGCTGAAACTGCTGCTGCTCTT GCAGCTGCGTCTTTGGTGTTTAGAAGATGTGACCCCACTTATGCCAAGCTTTTGGTCAGGAGAGCTATCAGGGTGTTCCAATTTGCTGATAAGTACAGAG GAGCCTACAGCAATGGACTGAAGAGATTTGTTTGCCCTTTCTATTGCTCCTATTCTGGATATGAGGATGAGCTGCTGTGGGGTGCTGCTTGGCTGCATAA GGCGACCAAGAATCCAACTTATCTCAATTACATTCAAGTTAACGGACAGAATCTTGGAGCTGCACAGTTTGACAATACCTTTGGTTGGGATAACAAGCAT GTTGGTGCAAGGATTCTTCTTTCCAAGGCATTTCTTGTTCAAAAACTGCAATCCCTCCATGACTACAAAGGACATGCAGATAATTTCATCTGTTCTCTCA TACCAGGGGCCCCTTTCTCTTCAGCCCAATATACACCAGGCGGGCTGCTGTTCAAAATGAGTGATAGCAACATGCAATACGTCACCTCAACTTCATTCTT GCTCTTAACCTATGCCAAGTACTTGACCTCTGCTCGCACGGTTGTAAACTGTGGTGGAACCGTTGTCACTCCAAAGAGGCTACGAACCATTGCCAAGAAA CAGGTGGACTATCTACTTGGAGACAACCCATTGAAAATGTCCTACATGGTGGGGTATGGTCCAAGGTATCCACAAAGGATTCACCACAGGGGCTCATCTC TACCGTCAATCGCTACACACCCAGGAAAGATCCAATGCACCTCAGGCTTTAGTGTGATGAATTCTCAATCCCCAAACCCCAACGTTCTTGTGGGTGCGAT AGTTGGAGGGCCAGACGAACATGACAGGTTCCCAGATGAAAGATCAGACTATGAGCAATCTGAACCAGCTACTTACATTAACGCACCCCTGGTAGGAGCA TTGGCTTATCTCGCGCACTCTTCCGGCCAGCTCGAAGTCCTAGCAGCATCTCCAATTTGTTAG
AA sequence Show only first row Show all	>Potri.002G202400.1 pacid=42778437 polypeptide=Potri.002G202400.1.p locus=Potri.002G202400 ID=Potri.002G202400.1.v4.1 annot-version=v4.1 MACANFSFTFLVLCSCFATSFIACHGFPVHHNNPFHHRRHPRFASHNYRDALTKSILFFEGQRSGKLPSSQRMTWRRDSGLTDGSTMHVDLVGGYYDAGD NVKFGFPMAFTTTMLSWSVLEFGGLMKGELQNAREAIRWATDYLLKATAHTDTIYVQVGNANKDHACWERPEDMDTPRSVFKVDKHSPGSDVAAETAAAL AAASLVFRRCDPTYAKLLVRRAIRVFQFADKYRGAYSNGLKRFVCPFYCSYSGYEDELLWGAAWLHKATKNPTYLNYIQVNGQNLGAAQFDNTFGWDNKH VGARILLSKAFLVQKLQSLHDYKGHADNFICSLIPGAPFSSAQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSARTVVNCGGTVVTPKRLRTIAKK QVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSIATHPGKIQCTSGFSVMNSQSPNPNVLVGAIVGGPDEHDRFPDERSDYEQSEPATYINAPLVGA LAYLAHSSGQLEVLAASPIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.002G202400 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Potri.019G065100 [exp]	5.74	0.9124
AT1G80440			Galactose oxidase/kelch repeat...		Potri.001G178300 [exp]	8.12	0.9086
AT1G09040			unknown protein		Potri.005G027300 [exp]	10.67	0.8123
					Potri.004G147966 [exp]	11.48	0.8893
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	11.61	0.8925
					Potri.010G225900 [exp]	14.73	0.8820
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117067 [exp]	18.46	0.8820
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G065200 [exp]	22.24	0.8665
AT4G10270			Wound-responsive family protei...		Potri.013G148000 [exp]	23.06	0.8715
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.010G055400 [exp]	24.81	0.6843	Pt-GAPDH.3

Compare expression of checked genes

Potri.002G202400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.