Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02320 576 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 567 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 534 / 0 ATPME2 pectin methylesterase 2 (.1) AT3G14310 515 / 5e-178 ATPME3 pectin methylesterase 3 (.1) AT5G53370 488 / 2e-167 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 468 / 1e-159 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 460 / 1e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 460 / 2e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 449 / 3e-152 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 443 / 6e-151 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 543 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 537 / 0 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 530 / 0 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.012G014500 [exp] 505 / 5e-174 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 498 / 2e-172 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 492 / 6e-169 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 486 / 1e-167 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 484 / 4e-167 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 478 / 2e-164 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008203 [exp] 595 / 0 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 511 / 4e-177 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 507 / 2e-175 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 499 / 8e-172 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 474 / 1e-162 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 465 / 4e-158 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 456 / 9e-157 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 449 / 7e-153 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 439 / 3e-149 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10022412 [exp] 448 / 6e-149 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.002G202500.1 pacid=42777449 polypeptide=Potri.002G202500.1.p locus=Potri.002G202500 ID=Potri.002G202500.1.v4.1 annot-version=v4.1 ATGTATCCCACCAGAGGAAGAACTAAACACTTGCTCTTTCTCTTGCCCATTTCAATCCTTGTCATAACTCTACTCTCCTTTAAAAGACCTGCTAAATTTA GCTCAAAAACCATAGAAATCCCACGATTACACATCCACAAACACATCCAAATTGCCCACTCAGCGTGTAAAGGCACACTATACCCTGAACTTTGCGTCTC AACTCTTGTATCTCTCCCAGATCTCGCCTCTAAGTCCCTTCAAGAATTTATCTCTGCAACCTTAAACAAAACAATGGACGAGGTTAGAGCCTCCTCCGCA GACTGCAATGCCATCAGAAACAAAATGAAGCTAGGACCACTTGAAAAGGTAGCTCTCAAAGACTGTATCGAGCTCTTCGATGACACCATTGCCGAGCTCA AATCAGCCATCTCTAACCTTGCCCTAAGAAAACCAACCTCAAAGCATTACCACGACTTGCAAACTTTATTAAGTGGTGCCATGACGAACCAGTACACGTG CCTTGATGGGTTTGCTCGTAGTAAAGGAAAAGTTAGGAAAGCAATCAAGAAAGGCCTGTATAACATATCTCACCATGTAAGTAACTCCTTAGCCATGCTC AAGAAAATCCCTGGCGTTAACGCATCTAAGTCCGAGGTTTTCCCTGAGTATGGTAACGTAAAACATGGGTTTCCATCTTGGTTGTCAACCAAAGATCGAA AGCTCTTGCAGGCTTCCGCCAATGCAACCAAATTTGATTTAATAGTAGCTAAAGACGGTACAGGAAACTTCACTACCATTAGCGAAGCAGTGCGAGCAGC TCCAAACTCAAGCGATACAAGGTTTGTGATACATATAAAGGCCGGGGCATATTTTGAGAACGTGGAGGTGGAGAGAAAGAAGAAGATGCTAGTGTTCATT GGGGATGGCATTGGAAAGACTGTGGTCAAAGCAAACAGGAGTGTTGTTGATGGATGGACTACTTTCCGGTCAGCCACTGTCGCGGTGGTAGGAGACGGGT TCATTGCCAAGGGCATAACCTTCGAAAACTCAGCAGGGCCTAGTAAACACCAAGCAGTGGCCTTAAGAAGTGGCTCGGATCTCTCTGCATTTTATCAATG CAGCTTTGTTGGTTACCAAGACACCTTATATGTCCATACGCTTCGACAATTTTATCGCGAGTGCGACATATATGGCACGATTGACTTCATTTTTGGTAAT GCAGCTGTGGTATTTCAAAACAGCAACTTGTATGCTCGCAAACCAAATTCAAACCAAAAAAACATATTCACTGCCCAAGGTAGAGAAGACCCTAACCAAA ACACTGGAATATCAATCCTCAACTGCAAGGTTGCTGCTGCTGCTGATCTAATTCCAGTTAAATCATCGTTCCAAACGTTTTTAGGACGGCCATGGAAAGA ATACTCAAGGACAGTTTTTCTTCGATCATATATTGATGATCTGGTCGATCCTGCTGGATGGCTGGAATGGAATGCATCGTTTGCATTGAGTACCCTTTAC TATAGGGAGTACATGAACAGAGGTCCAGGTTCAAATACAAGTGCAAGGGTGACATGGCCTGGTTACAGGATCATCACAAATTCAACTGAGGCCAGTCAGT TTACAGTCGGGGCATTTATACAAGGAAATACCTGGTTGAATTCTACAGATATTCCATACTTTCTCAATTTGAATTAA
AA sequence Show only first row Show all	>Potri.002G202500.1 pacid=42777449 polypeptide=Potri.002G202500.1.p locus=Potri.002G202500 ID=Potri.002G202500.1.v4.1 annot-version=v4.1 MYPTRGRTKHLLFLLPISILVITLLSFKRPAKFSSKTIEIPRLHIHKHIQIAHSACKGTLYPELCVSTLVSLPDLASKSLQEFISATLNKTMDEVRASSA DCNAIRNKMKLGPLEKVALKDCIELFDDTIAELKSAISNLALRKPTSKHYHDLQTLLSGAMTNQYTCLDGFARSKGKVRKAIKKGLYNISHHVSNSLAML KKIPGVNASKSEVFPEYGNVKHGFPSWLSTKDRKLLQASANATKFDLIVAKDGTGNFTTISEAVRAAPNSSDTRFVIHIKAGAYFENVEVERKKKMLVFI GDGIGKTVVKANRSVVDGWTTFRSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGSDLSAFYQCSFVGYQDTLYVHTLRQFYRECDIYGTIDFIFGN AAVVFQNSNLYARKPNSNQKNIFTAQGREDPNQNTGISILNCKVAAAADLIPVKSSFQTFLGRPWKEYSRTVFLRSYIDDLVDPAGWLEWNASFALSTLY YREYMNRGPGSNTSARVTWPGYRIITNSTEASQFTVGAFIQGNTWLNSTDIPYFLNLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02320			Plant invertase/pectin methyle...		Potri.002G202500 [exp]	0	1
AT2G03640			Nuclear transport factor 2 (NT...		Potri.008G096700 [exp]	64.80	0.6826
AT1G64160			Disease resistance-responsive ...		Potri.013G142602 [exp]	90.59	0.7177
AT1G64160			Disease resistance-responsive ...		Potri.001G096800 [exp]	108.59	0.7081	Pt-DRR206.2
AT1G64160			Disease resistance-responsive ...		Potri.001G096680 [exp]	111.49	0.7097
AT5G26330			Cupredoxin superfamily protein...		Potri.002G156401 [exp]	147.42	0.6796
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.001G451600 [exp]	204.47	0.6747

Compare expression of checked genes

Potri.002G202500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.