Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02810 749 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 738 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 708 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04970 488 / 8e-167 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 484 / 9e-166 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT2G26440 399 / 2e-133 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 397 / 6e-133 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 396 / 1e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 388 / 9e-129 ATPMEPCRA methylesterase PCR A (.1) AT4G33220 384 / 1e-127 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127000 [exp] 983 / 0 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 640 / 0 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 516 / 8e-179 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 511 / 1e-176 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 444 / 8e-151 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 430 / 9e-146 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 425 / 6e-144 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 410 / 7e-138 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 410 / 2e-137 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010309 [exp] 633 / 0 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013416 [exp] 572 / 0 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 561 / 0 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 561 / 0 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 543 / 0 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 481 / 1e-164 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 465 / 2e-158 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10008203 [exp] 419 / 5e-141 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 408 / 1e-136 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 396 / 4e-132 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.002G202600.1 pacid=42777641 polypeptide=Potri.002G202600.1.p locus=Potri.002G202600 ID=Potri.002G202600.1.v4.1 annot-version=v4.1 ATGGCTTCTAAACTCATCTCTCTACTAGTAATAGCTGCTGTTCTTCCTTTCTTTTCCTCTCCATCTTTAGCAAATGTCTCTCCAAGTAGTCTTGTCAGCC CTGGAACCCTTTGCAACGACACCCCAGACCCTTCCTATTGCAAATCTGTTCTCCCTAAGCAGTCTACCAATGTCTATGACTCTGCCCGACTTTGCGTCCG CAAGTCTCTATCACAATCCCGTACATTTTTGAACCTAGTTGATAAATATCTCTTACGCCGCTCCAGTTTGTCTATTACTGCAACTAGGGCTCTTGAGGAT TGCCGGTTTCTAGCTAATTTAAACATAGAGTTTTTGTTGAGCTCCTTTCAAACTGTCAATGCTACTAGTAAAACTTTGCCCGCTTTGAAAGCTGATGATG TACAAACTTTGCTAAGTGCCATTCTAACAAACCAGGAAACCTGTTTAGATGGCCTGCAGGCCACATCTTCTGCCTGGAGTGTAAGGAACGGTCTCTCAGT CCCTTTGTCTGATGACGCAAAACTTTATAGTGTTTCTCTTGCTTTTTTCACCAAAGGTTGGGTTCCTAAAATGAAGAAAAGGATCACATGGCAGCCTAAA AGCAAGCAGCTTGCATTCAGACATGGACGATTGCCATTCAAAATGTCTGCCAGGAACCATGCAATTTACGAATCAGTCAGTAGGAGAAAGCTTCTCCAGG CAGAGAATAACGATGTAGAGGTTAGTGATATAGTGACGGTGCGTCAGGACGGACAAGGGAATTTCACAACCATCAATGATGCTATTGCTGCAGCTCCAAA TAAAACCGACGGCAGTAATGGCTACTTCATGATTTATGTCACCGCTGGCATTTATGAAGAGTATGTGTCCATTGCAAAGAACAAGAGATATTTGATGATG GTAGGAGATGGCATAAATCAGACGGTGATTACTGGGAATCGTAGTGTTGTTGATGGGTGGACTACTTTCAATTCTGCTACATTTGCTGTAGTTGGACAAA ACTTTGTTGCAGTGAACATAACATTCCGGAACACAGCTGGGGCAGTCAAGCATCAGGCTGTAGCTCTTCGAAGTGGAGCTGATTTGTCCACATTTTATAG TTGCAGTTTTGAAGGGTACCAGGATACCTTATACACCCATTCTCTGAGACAATTCTACAGGGATTGTGATATCTATGGTACTGTTGATTTTATATTTGGC AATGCTGCTGTTGTTTTCCAGAATTGCAACTTGTATCCGCGGCTACCTATGAGTGGCCAATTCAATGCCATCACTGCCCAAGGTAGAAAAGACCCGAACC AAAACACAGGCACTTCTATACACAATTGTAATATTGCAGCTGCTGACGATTTGGCTTCAAGCAATATGACGGTCCAAACATATCTTGGGAGGCCATGGAA GGAATATTCAAGAACTGTTTACATGCAAAGTTCCATGGATACATCGATAAATCCTGCTGGTTGGCAAATATGGAATGGAGATTTCGCACTCAATACATCA TATTATGCAGAGTATAATAACACTGGACCGGGATCTGATACTACAAACAGGGTAACATGGCCAGGTTTCCACGTTATTAACGCCACTGATGCTGCTAATT TCACTGTCTCTGGCTTCTTGCTGGGGAATGAGTGGCTACCTCAAACAGCAGTTCCTTTCTCTAGTGACTTGATATGA
AA sequence Show only first row Show all	>Potri.002G202600.1 pacid=42777641 polypeptide=Potri.002G202600.1.p locus=Potri.002G202600 ID=Potri.002G202600.1.v4.1 annot-version=v4.1 MASKLISLLVIAAVLPFFSSPSLANVSPSSLVSPGTLCNDTPDPSYCKSVLPKQSTNVYDSARLCVRKSLSQSRTFLNLVDKYLLRRSSLSITATRALED CRFLANLNIEFLLSSFQTVNATSKTLPALKADDVQTLLSAILTNQETCLDGLQATSSAWSVRNGLSVPLSDDAKLYSVSLAFFTKGWVPKMKKRITWQPK SKQLAFRHGRLPFKMSARNHAIYESVSRRKLLQAENNDVEVSDIVTVRQDGQGNFTTINDAIAAAPNKTDGSNGYFMIYVTAGIYEEYVSIAKNKRYLMM VGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGAVKHQAVALRSGADLSTFYSCSFEGYQDTLYTHSLRQFYRDCDIYGTVDFIFG NAAVVFQNCNLYPRLPMSGQFNAITAQGRKDPNQNTGTSIHNCNIAAADDLASSNMTVQTYLGRPWKEYSRTVYMQSSMDTSINPAGWQIWNGDFALNTS YYAEYNNTGPGSDTTNRVTWPGFHVINATDAANFTVSGFLLGNEWLPQTAVPFSSDLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02810			Plant invertase/pectin methyle...		Potri.002G202600 [exp]	0	1
					Potri.002G048450 [exp]	3.16	0.8982
					Potri.009G025001 [exp]	7.74	0.8477
					Potri.011G073216 [exp]	12.24	0.8661
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.006G048300 [exp]	14.49	0.8248
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	15.87	0.8274
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.009G123600 [exp]	20.49	0.7876	/F5H2,Pt-IFS1.57
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016500 [exp]	21.63	0.7349
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	25.00	0.8053	COMT1,Pt-OMT1.2
AT1G02810			Plant invertase/pectin methyle...		Potri.014G127000 [exp]	25.21	0.8379
					Potri.002G066300 [exp]	29.06	0.8252

Compare expression of checked genes

Potri.002G202600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.