Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 512 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 376 / 2e-130 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 374 / 3e-130 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 343 / 2e-118 ATSEH soluble epoxide hydrolase (.1) AT4G15955 339 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 331 / 1e-113 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 281 / 7e-94 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 59 / 1e-09 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 55 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT5G53050 55 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 611 / 0 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 457 / 6e-163 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 424 / 5e-150 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 420 / 1e-148 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 419 / 4e-148 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 416 / 6e-147 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 311 / 2e-105 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 221 / 2e-70 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 217 / 2e-70 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010293 [exp] 489 / 8e-176 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 456 / 1e-162 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 430 / 2e-152 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 401 / 5e-141 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 393 / 5e-138 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 394 / 7e-138 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 392 / 2e-137 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 385 / 2e-134 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 378 / 6e-132 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 375 / 3e-131 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.002G202700.2 pacid=42779027 polypeptide=Potri.002G202700.2.p locus=Potri.002G202700 ID=Potri.002G202700.2.v4.1 annot-version=v4.1 ATGGATAAGATAGAGCACCAAACTGTAGCCACAAATGGCATAAACATGCACATAGCATCAATTGGTACAGGCCCAGTAATCCTATTCCTCCATGGCTTCC CTGAGCTCTGGTACTCATGGAGACACCAGCTCCTATCTCTCTCCTCCCTTGGATACCGTTGCATAGCCCCTGACCTTCGTGGTTACGGTGATACTGACGC GCCGAAGAATGTTAGAGAGTACACAATATTCCACATCGTGGGCGACCTTGTAGGGTTGATAGACTCTCTGGGCATTGATAAGGTGTTTTTGGTGGGCCAT GATTGGGGGTCAACGGTGGCTTGGTATTTTTGCTTGTTGAGGCCTGACAGAATTAAGGCCTTGGTTAACATGAGTGTTGTGTTTCAGCCCAGGAATCCAC ACAAGAGTTCTGTTCAGATAAGCAGAGAATTATTTGGTGATGATTTTTATATCTGCAGGATTCAGGAACCTGGAGAGGTTGAAGAAGACTTCGCTCAAAT GGATACTGCAAGTATAATTACAAGATTTCTGACCTCTCGTGATCCAAAGCCGCCTTGTATACCTAAAGAAGTAGGATTCAGAGGTATACCTTACAATCCA AATTTGCCTTCTTGGCTGTCAGAAAAAGACATCAACTATTATGCTGGCAAATTCAATCAGACAGGCTTCACTGGAGGATTGAACTACTATCGATGCTTGG ACCTAAACTGGGAGCTGATGGCAGCATGGACTGGGTTACAAATTAAAGTACCCGTTAAGTTTATCGTGGGTGATGTGGACCTTACCTATCATATTCCTGG AGTTAAAGAATACATAAGCAAAGGTGGCTTGAAAAAATATGTTCCCTTCTTGCAAGAAGTAGTTGTAATGGAAGGAGTAGCTCACTTTCTCAACCAAGAA AAGCCAGAGGAAGTTAGCGAACACATATACGATTTCATCAAGAAGTTTTAA
AA sequence Show only first row Show all	>Potri.002G202700.2 pacid=42779027 polypeptide=Potri.002G202700.2.p locus=Potri.002G202700 ID=Potri.002G202700.2.v4.1 annot-version=v4.1 MDKIEHQTVATNGINMHIASIGTGPVILFLHGFPELWYSWRHQLLSLSSLGYRCIAPDLRGYGDTDAPKNVREYTIFHIVGDLVGLIDSLGIDKVFLVGH DWGSTVAWYFCLLRPDRIKALVNMSVVFQPRNPHKSSVQISRELFGDDFYICRIQEPGEVEEDFAQMDTASIITRFLTSRDPKPPCIPKEVGFRGIPYNP NLPSWLSEKDINYYAGKFNQTGFTGGLNYYRCLDLNWELMAAWTGLQIKVPVKFIVGDVDLTYHIPGVKEYISKGGLKKYVPFLQEVVVMEGVAHFLNQE KPEEVSEHIYDFIKKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	0	1
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	1.73	0.9592
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	3.46	0.9564
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	5.74	0.9549
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	5.91	0.9517
AT1G71180			6-phosphogluconate dehydrogena...		Potri.001G211500 [exp]	7.07	0.9320
AT5G61820			unknown protein		Potri.015G108600 [exp]	8.12	0.9384
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	8.48	0.9498
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	9.16	0.9527
AT1G48450			Protein of unknown function (D...		Potri.015G031200 [exp]	9.38	0.9496
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.005G079600 [exp]	10.67	0.9452	Pt-ACT11.10

Compare expression of checked genes

Potri.002G202700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.