Plant FIBer expression Database

Potri.002G203200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02350 1186 / 0 SEC15B exocyst complex component sec15B (.1)
AT3G56640 792 / 0 SEC15A exocyst complex component sec15A (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G127400
[exp]
1472 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1)
Potri.016G032100
[exp]
803 / 0 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1)
Potri.006G034200
[exp]
793 / 0 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010439
[exp]
769 / 0 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1)
Lus10009856
[exp]
765 / 0 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1)
Lus10027288
[exp]
764 / 0 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1)
Lus10038993
[exp]
763 / 0 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1)
Lus10010296
[exp]
629 / 0 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1)
Lus10010295
[exp]
580 / 0 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1)
Lus10009857
[exp]
143 / 5e-40 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF04091 Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence
>Potri.002G203200.3 pacid=42779981 polypeptide=Potri.002G203200.3.p locus=Potri.002G203200 ID=Potri.002G203200.3.v4.1 annot-version=v4.1
ATGCTCTCCGCAAAGGTTCGCCGTAAAATAGCTCCGGCGAACGGAGACACTGACAACTCCGCAGACAAACAAGACCAGCTCCTCCTCTCCGCCGCCATCT
ACAACGGCGAAGACCTCGGTCCTTCCGTCCGCAAGGCCTTCGCTTCTGGTAAGCCGGAGACACTCCTCCACAATCTTCGCCACTTCGCTCGTTCTAAAGA
ATCTGAAATCGAAGAAGTCTGCAAAGCTCACTACCAAGACTTCATCTTAGCCGTTGATGACCTCCGATCTCTCCTTTCCGATGTCGATTCACTCAAATCC
GCACTCTCCGATTCCAACTCCAAGCTGCAGTCCGTCGCTGGGCCCCTCTTAACCTCTCTCGACTCCTACCTCGAAGCTCAAACGGTATCGCATAATGTAA
ACTTAGCTCTCAGTTTGATTTTCTCTTGTATCAAGCTATTAGAGCTTTGTTCCAGAAGTAATTACCATTTATCTCGCGGTAATTTTTACATGGCGTTGAA
GTGTGTGGATTCGATTGAGACTGATTTTTTAGATAAAACGCCGTCGTCTACGTTGAAGAGAATGTTAGAGAAGAAGATCCCGGATATTAGATCGCATATA
GAGAGGAAAGTTAGTAAGGAGTTTGGTGATTGGTTAGTGGAGATTCGTGTGGTGAGTCGGAACTTGGGGCAATTGGCTATTGGTCAAGCCTCTGCGGCGA
GGCAGAGAGAGGAGGACTTGAGAATTAAGCAGAGGCAAGCTGAAGAACAGAGTAGGCTTAGTTTGAGAGATTGTGTTTATGCTTTGCAAGAGGAGGAGGA
GGAAGATGGGCTTAGTGGTGTGATGGGTGATGATGGTAAAGATGGGTATGGTAATGGTGGTGGTAATGGATTGTTGGGGTTTGATTTGACACCCCTTTAT
AGGGCTTATCATATACATCAGACCTTAGGACTTGAAGATCGGTTTAAGCAGTACTATTTTGAGAATAGGAAGCTTCAATTGACTTCAGATTTTCAGGTGT
CCTCGATGACCCCATTTCTTGAATCGCATCAGACTTTCTTTGCGCAAATTGCGGGGTTTTTTATTGTGGAAGATCAAATCTTGAGGACTGGAGGGGATTT
GATTTCGAGAATGAAAGTTGAGAATTTGTGGGAAACTGCTGTTAGTAAGATGTGTTCTGTGTTGGAGGATCAGTTTTCTAGAATGCAAACTGCAAATCAT
CTCTTGTTGATTAAGGATTATGTGAGTTTGCTTGGAGTAACTTTGCGGAGATATGGGTATCCTGTTGATGCCTTGTTAGATGTGTTGAGCAAGCACAGGG
ATAAGTATCATGAGCTATTGTTGTCTGATTGTCGTAAGCAGATTGCAGAAGCACTTGCTGCTGATACGTTTGAGCAGATGTTGATGAAGAAAGAGTATGA
ATATTCTATGAATGTGCTTTCGTTTCAATTACAGACGTCGGACATTGTGCCTGCATTTCCTTATGTTGCACCTTTTTCATCCACTGTGCCTGATTGTTGC
CGAATCGTACGGTCTTTTATTGAAGATTCTGTGAGTTTTATGTCATATGGTGGGCAGCTGGAATTCTTTGATGTTGTAAAGAAATATTTGGACCGGTTTC
TGAGTGAGGTTTTGGATGAAGCTCTATTGAAGCTTATTAGTACATCAGTTCATGGGGTATCCCAGGCTATGCAGGTTGCAGCAAACATGGCTGTGCTAGA
ACGTGCTTGTGATTTCTTCTTTCGTCATGCTGCACAACTTTCAGGAATTCCCTTGAGAATGGCAGAGAGGGGTAGGCGACAGTTTCCACTAAACAATGCT
CGTGATGCAGCAGAAGAAATGCTATCTGGGCTGCTTAAACAGAAGGTTGACGGTTTTATGACCTTGATTGAGAATGTGAACTGGATGGCTGATGAGCCCA
CGCAAAGTGGCAATGAATATGTGAATGAAGTCATGATATATTTGGAAACTTTGGTTTCTACTGCTCAACAGATTTTGCCAGCTCCTGTTCTGAAAAGAGT
TCTGCAAGATGTTCTTTCTCACATTTCAGAGATGATTGTTGGGGCTTTACTTGGGGACTCAGTTAAGAGGTTTAATGTCAATGCTATCATGGGGATTGAT
GTAGATATCCGATTATTGGAATCTTTTGCTGACAATCAAGCTGCTTTGTTCTCTGAAGGGGATGCCAATCAGTTGAAAACAGCACTTGCTGAGGCAAGGC
AACTGATTAATTTGCTTTTGAGCAATCATCCTGAGAATTTTCTGAATCCTGTGATCAGGGGGAGGAGTTATAATACATTGGACTATAGGAAAGTAATGAC
AATATCAGAGAAGTTGAGGGATCCTTCAGATCGGCTATTTGGAACATTTGGGAGCAGGGCAGCCAGGCAGAATCCAAAGAAGAAATCTCTGGATACATTG
ATTAAAAGACTCAAGGATGTCAGTTGA
AA sequence
>Potri.002G203200.3 pacid=42779981 polypeptide=Potri.002G203200.3.p locus=Potri.002G203200 ID=Potri.002G203200.3.v4.1 annot-version=v4.1
MLSAKVRRKIAPANGDTDNSADKQDQLLLSAAIYNGEDLGPSVRKAFASGKPETLLHNLRHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKS
ALSDSNSKLQSVAGPLLTSLDSYLEAQTVSHNVNLALSLIFSCIKLLELCSRSNYHLSRGNFYMALKCVDSIETDFLDKTPSSTLKRMLEKKIPDIRSHI
ERKVSKEFGDWLVEIRVVSRNLGQLAIGQASAARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEEEEDGLSGVMGDDGKDGYGNGGGNGLLGFDLTPLY
RAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDQILRTGGDLISRMKVENLWETAVSKMCSVLEDQFSRMQTANH
LLLIKDYVSLLGVTLRRYGYPVDALLDVLSKHRDKYHELLLSDCRKQIAEALAADTFEQMLMKKEYEYSMNVLSFQLQTSDIVPAFPYVAPFSSTVPDCC
RIVRSFIEDSVSFMSYGGQLEFFDVVKKYLDRFLSEVLDEALLKLISTSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERGRRQFPLNNA
RDAAEEMLSGLLKQKVDGFMTLIENVNWMADEPTQSGNEYVNEVMIYLETLVSTAQQILPAPVLKRVLQDVLSHISEMIVGALLGDSVKRFNVNAIMGID
VDIRLLESFADNQAALFSEGDANQLKTALAEARQLINLLLSNHPENFLNPVIRGRSYNTLDYRKVMTISEKLRDPSDRLFGTFGSRAARQNPKKKSLDTL
IKRLKDVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02350 SEC15B exocyst complex component sec1... Potri.002G203200
[exp]
0 1
AT4G32285 ENTH/ANTH/VHS superfamily prot... Potri.018G128200
[exp]
4.58 0.7790
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.017G017800
[exp]
4.69 0.8142
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Potri.010G043800
[exp]
10.67 0.7923
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Potri.010G043700
[exp]
17.74 0.7626
AT1G44130 Eukaryotic aspartyl protease f... Potri.002G081400
[exp]
21.84 0.7589
AT2G19710 Regulator of Vps4 activity in ... Potri.006G149800
[exp]
24.33 0.7741
AT1G34190 NAC ANAC017 NAC domain containing protein ... Potri.002G061300
[exp]
26.92 0.7675
AT2G40090 ATATH9 ABC2 homolog 9 (.1) Potri.008G067900
[exp]
26.98 0.6879 Pt-ATH9.2
AT4G36990 HSF AT-HSFB1, ATHSF... ARABIDOPSIS THALIANA HEAT SHOC... Potri.007G043800
[exp]
27.20 0.7292
AT3G59430 unknown protein Potri.017G029800
[exp]
32.78 0.7207

Potri.002G203200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.