Plant FIBer expression Database

Potri.002G203700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02400 627 / 0 U3 ribonucleoprotein (Utp) family protein (.1)
AT5G08600 577 / 0 U3 ribonucleoprotein (Utp) family protein (.1), U3 ribonucleoprotein (Utp) family protein (.2)
AT5G36980 60 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G128300
[exp]
1248 / 0 AT4G02400 634 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030364
[exp]
772 / 0 AT4G02400 683 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
Lus10007881
[exp]
720 / 0 AT4G02400 636 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04615 Utp14 Utp14 protein
Representative CDS sequence
>Potri.002G203700.2 pacid=42776920 polypeptide=Potri.002G203700.2.p locus=Potri.002G203700 ID=Potri.002G203700.2.v4.1 annot-version=v4.1
ATGAAGATGATAGAGAAGAAGAGAAAATCGAGAGACGGTAAGAAACATGATAGACCACAAAAATTTACCAAAAAGTCCAAATTCAGCAAAAAATACGGCA
AGAGTGAGGACGAGAAAAGGCGAACCGGTCCACGCTTACCTCAATCTCTTAGGAAAGAGCTCGATCGAATCAACCCTAATGACCAGTCCTGCAGTGAAGA
AGATGAAGGTATTAACGGCGACGTTTATGAATACGAGGAAGAAGTGCCTGAAGAGGAATCAAAGAAGAACCGCCGCTTCGATTCCGTTGAGAATTACGAG
TATAAGTTACCTGAGGATTTTAAGGATGAGAATGTTGAATCGGATGACGACGATTATGACTTTGATGGTGGCGAAAAAAAGATTGCTGACCATAAGGGTA
AAAAGGGAGACCTAGATCAACTTGGTGATGATGTTGAAGATGAAGATGATGAACGGCATCTGAGGATGTTGCAAGGAATCACTGGAATGCCAAGTCAGGC
CTTTCAAGGCCGGAAGAAAAACAAAGTTGTTGTATCCGAGGGATATCCAGAGTCTGAATATAATCCTACTCGTGATGTTCTGGATGGTGATGGCCGCATT
GCTATTGAAGACCTTCTTGAAAGCATTCAAGGAAAACCTGGTTATAGAGAGCTTCGAAATATAACTCGTCATGTGGAGAAAAAAGGAAAGCTTCTTCAAG
CTCCACTTCCCAAGGAGGATCGAGACAGGTTAGAAAGGAACGCTGCTTATGAACAATCAAAGAAAGATATTACAAGATGGGAGCCTTTGGTCAAGAGGAA
TAGGGAGGCACCTACCATTATTTTTGATAAAGATACAGATTCAGGGTTTTCAACTGTAGGGGCAATAGCGTCCGAATTTGAGCCTAGAACTGAGTTTGAG
AAGAAAATGTCTTCATTAGTTAATGATGACAAGGTTATGGCAGCTCATAAAGAAGATGGCTCAAGGCTTCTTGAATTAAATAAGATATCCCTTGAAGATT
ACGTAAACAGTCGAAATCATATTGCAAAAATGCGGAGCCTTCTTTTCCGCCATGAGGTGAAGATGAAACGCGTCAAGAAGATAAAATCAAAAACATACCA
TCGGTTGTTGAAGAAAGAAAGATTGAAAGGATCTGTAGGAATGCCGATGGATGCAGAAGAAGCCAAAGAACTGGCAATGAAGCAAGAGTTCAAACGTGCA
GAGGAACGCATGACCTTAAGGCACAAAAACCAATCGAAATGGGCACAACGTATTGTTAAGCGTGGTTTGGATGCCCAAGATGAAGGTACTCGAGCTGCTA
TGGCTGAACAACTCCATCAGCATGCTCTTTTGACTAGGAAAATGAACTCTATGAATGACAGTAGCAGCAGTGATGACAGCAGCGATGAAGAAGATAGCGA
AAATGCAGGTGGTTCAGAAGAGGACAAGGCACCTAAGTTGCTAGCACAAGCAAGAGAGAAGACAAGACGAGTATTAGAAGAAGATGATGAAGTGCCTGAT
TCGGGAGTCCTGTCTTTACCTTTCATGAAAAGGGCATTGAAGAAAAAGAAGGAAGCAGCTGATGAAGAAGGTAGGCTTGCTATTCAAGAGTTTGAATCGT
CATTGATGCAGCTGGAGGATGCAGATGGGGCAGAAATTACAAAAACAGGCAGTGTGAGTGGTCGAAGGGTGTTTGGTGCATCTAAAATGCAGGTTATAGA
ACCTAAAAATAAGATCAGATCAAGCAGTTATTCCAGTGATAGTGAAGCTGAGTTGGAAGCTGAAGAAGACATTGATGTTGGTTTAGGCAGAACAGATGAT
GTGCAAAATAATATCGATGTCAATTCTGTTTTGCTTGATGTAGATGCCAACACTCCTCGGGATTCTGTTTTGAAGATTTCTGAACTTGTTAAAGACCTAG
GTCCCAAGACGACATATGAAGTTTCTATGCTTCATTCAGACACATGGAAAAAGCAGATGAGCAGCAGTCGAAATGAAGTTGACACCAATGGCAAAAGGTC
TCGGAAAGTTGTTGAACCTGTTACCCATAATCGAGATATAGAATTAGAGGAAGTAGGGGAGGATAGTGATGCGGATAGTGAAGGACAGATGCTGGATGGG
ATTTTGTCTTCAGAGCACAAATCATCTTACAAGCTTCCTTCCCAAGCAGAGCTTATACGTGAAGCTTTTGCAGGGGATGATGTGCAAGAAGAATTTAGCA
AAGATAAAGAGGAAATTATGAACGAGGAAAATCCTGAACCTGAAAAACCTGTTCAACTTCCTGGCTGGGGCCAATGGACTCGGGTACAGAAAAAGAAAGG
TTTGCCTTCATGGGTTTTGGAAGAGCATGAAAATGCAAAGAGAAAAAGGGATGAGGCTCTGAGGAAAAGGAAGGATGCACATCTTAAACATGTTATCATC
TCAGAGAAGTTGGATAAAAAGGCAGAAAAATTGCTTACAGGAACACTGCCTTACCCCTTCACATCGAAGGAAGTTTTTGAGCAGAGCATCCGCATGCCTA
TAGGGCCTGAATTCAATCCTGCAACAGCTGTCAGAGCTCTTAATCGGCCTGAAGTGGTGAAAAAACAAGGGCTGATTATTAAACCAATCAGATATGAAGA
TGTGGATTCCCATGAAAGAGGGGAGGAGCATAGAGAAAGTGGACAGAAGCAAAGGATAAATCGGAGCCAAGGCAGAGTAAAGGCAGTAGTGGCAAAGTCA
TGA
AA sequence
>Potri.002G203700.2 pacid=42776920 polypeptide=Potri.002G203700.2.p locus=Potri.002G203700 ID=Potri.002G203700.2.v4.1 annot-version=v4.1
MKMIEKKRKSRDGKKHDRPQKFTKKSKFSKKYGKSEDEKRRTGPRLPQSLRKELDRINPNDQSCSEEDEGINGDVYEYEEEVPEEESKKNRRFDSVENYE
YKLPEDFKDENVESDDDDYDFDGGEKKIADHKGKKGDLDQLGDDVEDEDDERHLRMLQGITGMPSQAFQGRKKNKVVVSEGYPESEYNPTRDVLDGDGRI
AIEDLLESIQGKPGYRELRNITRHVEKKGKLLQAPLPKEDRDRLERNAAYEQSKKDITRWEPLVKRNREAPTIIFDKDTDSGFSTVGAIASEFEPRTEFE
KKMSSLVNDDKVMAAHKEDGSRLLELNKISLEDYVNSRNHIAKMRSLLFRHEVKMKRVKKIKSKTYHRLLKKERLKGSVGMPMDAEEAKELAMKQEFKRA
EERMTLRHKNQSKWAQRIVKRGLDAQDEGTRAAMAEQLHQHALLTRKMNSMNDSSSSDDSSDEEDSENAGGSEEDKAPKLLAQAREKTRRVLEEDDEVPD
SGVLSLPFMKRALKKKKEAADEEGRLAIQEFESSLMQLEDADGAEITKTGSVSGRRVFGASKMQVIEPKNKIRSSSYSSDSEAELEAEEDIDVGLGRTDD
VQNNIDVNSVLLDVDANTPRDSVLKISELVKDLGPKTTYEVSMLHSDTWKKQMSSSRNEVDTNGKRSRKVVEPVTHNRDIELEEVGEDSDADSEGQMLDG
ILSSEHKSSYKLPSQAELIREAFAGDDVQEEFSKDKEEIMNEENPEPEKPVQLPGWGQWTRVQKKKGLPSWVLEEHENAKRKRDEALRKRKDAHLKHVII
SEKLDKKAEKLLTGTLPYPFTSKEVFEQSIRMPIGPEFNPATAVRALNRPEVVKKQGLIIKPIRYEDVDSHERGEEHRESGQKQRINRSQGRVKAVVAKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.002G203700
[exp]
0 1
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Potri.005G021400
[exp]
1.73 0.8392
AT1G10490 Domain of unknown function (DU... Potri.007G079300
[exp]
2.64 0.8613
AT4G25730 FtsJ-like methyltransferase fa... Potri.009G118400
[exp]
2.82 0.8585
AT2G34357 ARM repeat superfamily protein... Potri.006G137900
[exp]
3.46 0.8380
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
4.47 0.8322
AT1G30240 unknown protein Potri.010G238000
[exp]
7.00 0.8302
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Potri.002G213500
[exp]
10.19 0.7978
AT1G42440 unknown protein Potri.005G250100
[exp]
10.39 0.8060
AT1G63810 unknown protein Potri.007G024600
[exp]
11.83 0.7924
AT4G32420 Cyclophilin-like peptidyl-prol... Potri.018G030300
[exp]
12.00 0.7173

Potri.002G203700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.