Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02405 325 / 8e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G42760 40 / 0.001 Leucine carboxyl methyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260300 [exp] 44 / 8e-05 AT5G42760 483 / 9e-173 Leucine carboxyl methyltransferase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015003 [exp] 424 / 7e-150 AT4G02405 336 / 5e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10038881 [exp] 422 / 3e-149 AT4G02405 334 / 2e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04072 [poplar] [flax] LCM Leucine carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G203900.2 pacid=42779237 polypeptide=Potri.002G203900.2.p locus=Potri.002G203900 ID=Potri.002G203900.2.v4.1 annot-version=v4.1 ATGGAAGGGTTGTTGGGCTTTGTGCGTTCACCAGCGGCTACTCCTATCGTGAGCCCTTCTCTGTTCTACCCTTCAAAATCAAAGAAAAATAGCTGGTTGA GAGCCAAACTCAACGCTGAAAATGACCCATTACTCCAAGCCGCCACTAGTGCTGCTTCACTTCGTTTCCAGGAAATGCATCGACCAGAGCCTCTTTTCGT GGATCCATATGCTGGTTGCTTTGTTCATCCCGATGTACAGATGGATTCGAAGTGCTCACACCAGTATTGCCTTGCGACTAAATTCATTGATGATAAGTTA CTACGTACAGTGAACCATATCGATGGACTCAAGCAGGTTGTTTTGTTAACAGATGGGATGGAAACTCGGCCATATAGGCTTAACTGGCCAACTTCAACTG TAATATTTGACATATCCTCAGAAAGGATATTTAAAAAGTCAGCTGAAAAGCTTCAAGGTGTTGGGGCCAAAATTCCAAGAAATTGCTTGTTCCTTCATGT TCCTTTGGAGTCCTCTGATATACAACACAGTCTGCTTGCTAAAGGCTTTAATGGTAATCAGCCTAGTGTATGGGTCATCCAGGGACTGCCTGTTATGACT TTGGCAAATTTCAAAGAAATTTTGTTGGTTGCCAGTAGTTTGGCCATGAGTGGATGCTTGTTCTTGGGGGAACTGCCTGCATGGTTGGCAGAAACTGAAA TTGGCATCAAGCCCAGCGCAGAGAAATGGATGAACAAGCTCTTCATGAGCAATGGCTTCCGAGTGGACATGATTGGCTATGATGAAGTTGCTAAGAGTTT AGGAAAGGAAGTATCACCAGGAGAATACAAGAATATATTATTTGTCGCAGAACAATTGCAATTTTCAGATGATCAGATGGAATTTTGGAGGAGAGAATTA CAAAGGGTTGAGGAGGAAGGGGATGAAGAAGGGTTCGAGGAGCTCTAA
AA sequence Show only first row Show all	>Potri.002G203900.2 pacid=42779237 polypeptide=Potri.002G203900.2.p locus=Potri.002G203900 ID=Potri.002G203900.2.v4.1 annot-version=v4.1 MEGLLGFVRSPAATPIVSPSLFYPSKSKKNSWLRAKLNAENDPLLQAATSAASLRFQEMHRPEPLFVDPYAGCFVHPDVQMDSKCSHQYCLATKFIDDKL LRTVNHIDGLKQVVLLTDGMETRPYRLNWPTSTVIFDISSERIFKKSAEKLQGVGAKIPRNCLFLHVPLESSDIQHSLLAKGFNGNQPSVWVIQGLPVMT LANFKEILLVASSLAMSGCLFLGELPAWLAETEIGIKPSAEKWMNKLFMSNGFRVDMIGYDEVAKSLGKEVSPGEYKNILFVAEQLQFSDDQMEFWRREL QRVEEEGDEEGFEEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02405			S-adenosyl-L-methionine-depend...		Potri.002G203900 [exp]	0	1
AT3G47490			HNH endonuclease (.1.2.3)		Potri.009G004200 [exp]	2.64	0.8354
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	4.24	0.8044
AT3G51140			Protein of unknown function (D...		Potri.007G015600 [exp]	8.30	0.8030
AT1G07615			GTP-binding protein Obg/CgtA (...		Potri.001G239600 [exp]	8.48	0.7594
AT3G04020			unknown protein		Potri.010G205900 [exp]	11.83	0.7889
AT4G14746			unknown protein		Potri.010G082500 [exp]	13.49	0.7548
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	14.00	0.7899
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.001G244900 [exp]	14.07	0.7652
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	15.96	0.7484
AT3G55140			Pectin lyase-like superfamily ...		Potri.006G214400 [exp]	25.98	0.7138

Compare expression of checked genes

Potri.002G203900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.